BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB03RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1332 0.0
>3x_Contig1697
Length = 16220
Score = 1332 bits (672), Expect = 0.0
Identities = 703/712 (98%), Gaps = 1/712 (0%)
Strand = Plus / Minus
Query: 45 gcttgacaaaactaaacgatattatcgataagcagatcactggacccagatactggtact 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10471 gcttgacaaaactaaacgatattaacgataagcagatcactggacccagatactggtact 10412
Query: 105 ctgcacagcgcgagatatatctatatctatatatatatatatatatattcacacaagaat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10411 ctgcacagcgcgagatatatctatatctatatatatatatatatatattcacacaagaat 10352
Query: 165 agaacaagataatcacatcacgtgacaagagctgtacctcttccagctaaactatcatac 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 10351 agaacaagataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagac 10292
Query: 225 aataacttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10291 aataacttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgca 10232
Query: 285 gagaatgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10231 gagaatgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccc 10172
Query: 345 tgtacttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10171 tgtacttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcg 10112
Query: 405 ggaatttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaacca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10111 ggaatttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaacca 10052
Query: 465 gtattcatgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10051 gtattcatgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgttt 9992
Query: 525 ctccgacgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9991 ctccgacgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgag 9932
Query: 585 ggctttcctgttacactatgtcgatctgtttatccatgtttcaagtttcgccagttgtgt 644
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9931 ggctttcctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgt 9872
Query: 645 aagtttccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgctt 704
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9871 aag-ttccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcat 9813
Query: 705 gagagtttacgcagagattttgggctggtactgctgggttctttggtccctg 756
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 9812 gagagtttacgcagtgattttgtgctgctactgctgggttctttggtccctg 9761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,291
Number of Sequences: 1807
Number of extensions: 17291
Number of successful extensions: 2526
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)