BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZB04FM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1272                                                        1128   0.0  

>3x_Contig1272 
          Length = 8315

 Score = 1128 bits (569), Expect = 0.0
 Identities = 629/643 (97%), Gaps = 6/643 (0%)
 Strand = Plus / Minus

                                                                        
Query: 130  agcagtcaacacattgcttttcaaggaagcgatttcagggtttgttctactattcacaat 189
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8315 agcagtcaacacattgcttttcaaggaagcgatttcagggtttgt-ctactattcacaat 8257

                                                                        
Query: 190  tgctatcttctggttgagattaaactttttttcttacacgcaagcaactttattgaaatt 249
            ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 8256 tgctatcttctggttgagattaaacttctctccttacacgcaagcaactttattgaaatt 8197

                                                                        
Query: 250  gttgttaaaagttgacaagaaggttcctgaaagtcagaaagagaaatggaatttcattaa 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8196 gttgttaaaagttgacaagaaggttcctgaaagtcagaaagagaaatggaatttcattaa 8137

                                                                        
Query: 310  gggcttcctatacaacagaatgaaggaaagagaacaggctttacagagattcaaaattga 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8136 gggcttcctatacaacagaatgaaggaaagagaacaggctttacagagattcaaaattga 8077

                                                                        
Query: 370  tacatgaattggaagaaaagaagctcaatttaacgtttcaagtataccattcttttcaac 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8076 tacatgaattggaagaaaagaagctcaatttaacgtttcaagtataccattcttttcaac 8017

                                                                        
Query: 430  attcatttgtgtgagcctttctatatttcaagtataagacgtttttattaataaacgtta 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8016 attcatttgtgtgagcctttctatatttcaagtataagacgtttttattaataaacgtta 7957

                                                                        
Query: 490  gtgtataagtgaataaaacaagcaaaagttgtatgcttaacttaaacacaattaagatta 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7956 gtgtataagtgaataaaacaagcaaaagttgtatgcttaacttaaacacaattaagatta 7897

                                                                        
Query: 550  taatattagatattcttactccagacttcatgcttatttcagatttattgagcttggtaa 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7896 taatattagatattcttactccagacttcatgcttatttcagatttattgagcttggtaa 7837

                                                                        
Query: 610  attagttatcttcctgtaatttttggttcagaagcagaactgataatttangattcatca 669
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7836 attagttatcttcctgtaatttttggttcagaagcagaactgataatttaggattcatca 7777

                                                                        
Query: 670  caataagcaattcaatcagaagtagaagttattgaatttcaagaaatggagtcagttatt 729
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| 
Sbjct: 7776 caataagcaattcaatcagaagtagaagtaattgaa-ttcaagaaatggagtcagttatg 7718

                                                       
Query: 730  atttaggtattttctcaaacccaacaaaaacgttagaaatgat 772
            | ||||||| | ||||||  |||||||||||| ||||||||||
Sbjct: 7717 a-ttaggtagtatctcaa--ccaacaaaaacg-tagaaatgat 7679


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9792
Number of Sequences: 1807
Number of extensions: 9792
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)