BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZB04RM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1610                                                        1332   0.0  

>3x_Contig1610 
          Length = 13981

 Score = 1332 bits (672), Expect = 0.0
 Identities = 730/739 (98%), Gaps = 9/739 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   gcttcaaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 gcttcaaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatt 3336

                                                                        
Query: 109  tcgtaaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgc 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 tcgtaaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgc 3396

                                                                        
Query: 169  gtttaggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatact 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 gtttaggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatact 3456

                                                                        
Query: 229  cagaaactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctat 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 cagaaactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctat 3516

                                                                        
Query: 289  tcgatatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttg 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 tcgatatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttg 3576

                                                                        
Query: 349  ctgttgcagttccttgttttatttctataattttggagactgactattgaaacgacccgc 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 ctgttgcagttccttgttttatttctataattttggagactgactattgaaacgacccgc 3636

                                                                        
Query: 409  taggatttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccg 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 taggatttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccg 3696

                                                                        
Query: 469  aggttgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaag 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 aggttgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaag 3756

                                                                        
Query: 529  cggagacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgt 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 cggagacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgt 3816

                                                                        
Query: 589  ctcagatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgt 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 ctcagatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgt 3876

                                                                        
Query: 649  tgaagaacgaattgatttcgaagaacccaacaaaggcccagcagttttgctcaacgtttg 708
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 3877 tgaagaacgaattgatttcgaagaacccaacaaaggcccagcag-tttgctcaacg-ttg 3934

                                                                        
Query: 709  gtctacgcaagttcgatgccagagtctagacatcatatttaagcaggtttgcgttaccaa 768
            ||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 3935 gtctacgcaag-tcgatg-cagagtctagacatcata-ttaagca-gtttgcgtta-caa 3989

                               
Query: 769  gcgtttgggttgatccaga 787
            |||||  ||||||||||||
Sbjct: 3990 gcgtt--ggttgatccaga 4006


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7261
Number of Sequences: 1807
Number of extensions: 7261
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)