BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB05FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1298 1292 0.0
>3x_Contig1298
Length = 8615
Score = 1292 bits (652), Expect = 0.0
Identities = 794/822 (96%), Gaps = 16/822 (1%)
Strand = Plus / Plus
Query: 87 actgagaatatcatcacataattcatctaagtacttttgcaattcaggattcacattcac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5877 actgagaatatcatcacataattcatctaagtacttttgcaattcaggattcacattcac 5936
Query: 147 tggtatatggctaggtaagttgaatgcgtgataatctgtccaggaaaaggtttctctagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 tggtatatggctaggtaagttgaatgcgtgataatctgtccaggaaaaggtttctctagg 5996
Query: 207 gtaaatgtctctattataccagataagctgaatccaagctttcaaataaaccggaagcca 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 gtaaatgtctctatgataccagataagctgaatccaagctttcaaataaaccggaagcca 6056
Query: 267 tttttcgatgaacttcattcacgaaagtcagtaattctctcaaagtcgatgtagcgtcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 tttttcgatgaacttcattcacgaaagtcagtaattctctcaaagtcgatgtagcgtcag 6116
Query: 327 tgtgccatagagaatttactgttcttaccgtaaatgtttgtattatgacaatttccattg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6117 tgtgccatagagaatttactgttcttaccgtaaatgtttgtattatgacaatttccattg 6176
Query: 387 agtgatcctacgagcttagtattttgaaaacctttaaaataaaacatcttacataattga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6177 agtgatcctacgagcttagtattttgaaaacctttaaaataaaacatcttacataattga 6236
Query: 447 attacagttgagcgcacaccaaggaatttgttagtggtaatgtaaagagacatgccgaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6237 attacagttgagcgcacaccaaggaatttgttagtggtaatgtaaagagacatgccgaca 6296
Query: 507 gagtaaataattatgggtattcaggctatagaaaatgcagatattcataagattacttct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6297 gagtaaataattatgggtattcaggctatagaaaatgcagatattcataagattacttct 6356
Query: 567 ggccaggtgatcgttgatttgcgtagtgcaatcaaagagctactagagaatagtttagat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6357 ggccaggtgatcgttgatttgcgtagtgcaatcaaagagctactagagaatagtttagat 6416
Query: 627 gcgaaagctgataaaatcgaaatcatattcaagaattatggtatttgatccatagaattg 686
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 6417 gcgaaagctgataaaatcgaaatcatattcaagaattatggtattgaatccatagaa-tg 6475
Query: 687 cgctgat-atggggttgggtatttttgangatgatctggataatgtttggccagaaacat 745
||||||| |||||||| ||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct: 6476 cgctgataatggggtt-ggtatttctgaggatgatctggataatg-ttggccagaaacat 6533
Query: 746 cggacattcgaaattttcgtctttttgaggacgttttccaaggtcacgtcattttggaat 805
|||||| |||||| ||||||| ||||||||||| |||||||||||||||||||| | ||
Sbjct: 6534 cggaca-tcgaaaatttcgtc-ttttgaggacg-tttccaaggtcacgtcattt--ggat 6588
Query: 806 ttagaggtgaaggctattaccatcggttttgttcagatgggaaaagttttttattaccac 865
||||||||| |||||| || |||| ||| || |||||||||||||| || |||||| ||
Sbjct: 6589 ttagaggtg-aggcta-tagcatc-gttatg-tcagatgggaaaag-ttattatta-caa 6642
Query: 866 caactactaagggaccctaaggcttacaaaatagttttcaat 907
|||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 6643 caactactaaggga-cctaaagcttacaaaatagttttcaat 6683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)