BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB05RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1561 1027 0.0
3x_Contig1136 468 e-131
>3x_Contig1561
Length = 10959
Score = 1027 bits (518), Expect = 0.0
Identities = 518/518 (100%)
Strand = Plus / Minus
Query: 48 tgacccttttatcggaaatagagcgtaaagtgaataataccgttgctactcgattgttca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgacccttttatcggaaatagagcgtaaagtgaataataccgttgctactcgattgttca 459
Query: 108 cttccctgggagatgttgctttcttgagaagacaaccagaaccaatttctaccaaattga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cttccctgggagatgttgctttcttgagaagacaaccagaaccaatttctaccaaattga 399
Query: 168 aaacgttccaaaagaaagttgaaaaacttggcgttgagatggatataacaagttctgaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaacgttccaaaagaaagttgaaaaacttggcgttgagatggatataacaagttctgaat 339
Query: 228 cagttttgaattcaattcttgccatagataataacactacaagaatggcggttgagttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagttttgaattcaattcttgccatagataataacactacaagaatggcggttgagttat 279
Query: 288 ttttatccaagaccttaacaccggctaaatatttcatatctggtaaagtcgaacctgacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttttatccaagaccttaacaccggctaaatatttcatatctggtaaagtcgaacctgacc 219
Query: 348 aatttgcgcattattcattgaatttgccattgttcacacatttcacagctcctttgagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aatttgcgcattattcattgaatttgccattgttcacacatttcacagctcctttgagaa 159
Query: 408 gatactctgatcatgtggttcataggcagttgaagagcataattaatggtacagagtata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gatactctgatcatgtggttcataggcagttgaagagcataattaatggtacagagtata 99
Query: 468 aagaaactattgaatctttaaaaatcacgtctgaatattgtaatttcaaaaaggattgtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aagaaactattgaatctttaaaaatcacgtctgaatattgtaatttcaaaaaggattgtg 39
Query: 528 cacatcacgcacaggaacaggctatccatttactcctc 565
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 cacatcacgcacaggaacaggctatccatttactcctc 1
>3x_Contig1136
Length = 5035
Score = 468 bits (236), Expect = e-131
Identities = 273/280 (97%), Gaps = 4/280 (1%)
Strand = Plus / Minus
Query: 623 gttttgcaagtatatgaatcttcttttgatgtgtttatccctgaattaggtattgaaaag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5035 gttttgcaagtatatgaatcttcttttgatgtgtttatccctgaattaggtattgaaaag 4976
Query: 683 agagttcacggtgatcagttacctcttgttaaagcagaatttgacgttgccgagagagtc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4975 agagttcacggtgatcagttacctcttgttaaagcagaatttgacgttgccgagagagtc 4916
Query: 743 ttagaactctactggaag-aaggtgttgatagtgcgacttttgtgccatctgacgaacag 801
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4915 ttagaactctactggaagaaaggtgttgatagtgcgacttttgtgccatctgacgaacag 4856
Query: 802 aatccaaaatcttacagaaactctattaaaaataagttttaactccagcagttaaagaat 861
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct: 4855 aatccaaaatcttacagaaactctattaaaaataag-tttaactccagcagtaaagaaat 4797
Query: 862 tgcttttcaatc-aaacagcttgcagaacaatttgattag 900
||| |||||||| |||||||||||||||||||||||||||
Sbjct: 4796 tgc-tttcaatcaaaacagcttgcagaacaatttgattag 4758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7544
Number of Sequences: 1807
Number of extensions: 7544
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)