BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB06FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 599 e-171
>3x_Contig1779
Length = 24855
Score = 599 bits (302), Expect = e-171
Identities = 326/334 (97%)
Strand = Plus / Minus
Query: 95 caacagtggtctctaccaactctttcaatttctcaagaggatttgcattttctaacattg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13735 caacagtggtctctaccaactctttcaatttctcaagaggatttgcattttctaacattg 13676
Query: 155 gatcgagtaaaacctcttttactagtatcattaaatcattagaatcaacctcttcggtct 214
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 13675 gatcgagtaaaacctctttcacgagtatcattaaatcattagaatcaacctcttcggtct 13616
Query: 215 tctgtttctacttatctgaaataactggaaccatttgtgcaaactgataaatcttgagaa 274
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13615 tctgtttcaacagatctgaaataactggaaccatttgtgcaaactgataaatcttgagaa 13556
Query: 275 catcttctaagctcccatttttttgaagtttctttgctagtctgcggatatctggaacac 334
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13555 catcttctaagttcccatttttttgaagtttctttgttagtctgcggatatctggaacac 13496
Query: 335 taggtaagcattcttcttgtagagaagatcttaattctaactgatccatgaaaaattcaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13495 taggtaagcattcttcttgtagagaagatcttaattctaactgatccatgaaaaattcaa 13436
Query: 395 ctatatcatgccttttggtaatctggtcgatgtc 428
||| ||||||||||||||||||||||||||||||
Sbjct: 13435 ctagatcatgccttttggtaatctggtcgatgtc 13402
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,479
Number of Sequences: 1807
Number of extensions: 12479
Number of successful extensions: 2237
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)