BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB06RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1350 0.0
>3x_Contig1043
Length = 5132
Score = 1350 bits (681), Expect = 0.0
Identities = 735/749 (98%), Gaps = 3/749 (0%)
Strand = Plus / Plus
Query: 44 cttctactgttattagcaaaggttgagagaaaacagcgtgagctagtgaagtatttgata 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 cttctactgttattagcaaaggttgagagaaaacagcgtgagctagtgaagtatttgata 1161
Query: 104 cttttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtaggc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 cttttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtaggc 1221
Query: 164 aacagaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcttaaag 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1222 aacagaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcataaag 1281
Query: 224 gatgcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 gatgcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtca 1341
Query: 284 acaagaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 acaagaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagttg 1401
Query: 344 ccgttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccaccac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 ccgttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccaccac 1461
Query: 404 caacagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaagggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 caacagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaagggt 1521
Query: 464 actctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccctc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 actctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccctc 1581
Query: 524 ctcctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatgt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 ctcctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatgt 1641
Query: 584 tacagtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagtc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 tacagtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagtc 1701
Query: 644 tgggaagttctactccaaagagccatattcttacagcttattaaaggagttgagattagt 703
||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 1702 tggtaagttctactccaaagagccatattcttacagc-tattaaaagagtagagattagt 1760
Query: 704 ttccctgagtgtcttttttttcctataccaacctatgaaaataggtttagaagaagtaaa 763
||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||
Sbjct: 1761 ttccctgagtgtcttttcttccatataccaacctatgaaaatagg-ttagaagaagtaaa 1819
Query: 764 cattattctttattggtgccctgttggct 792
| ||||| |||| ||||| |||||||||
Sbjct: 1820 ccatattc-ttatcggtgcgctgttggct 1847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6799
Number of Sequences: 1807
Number of extensions: 6799
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)