BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZB07FM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1647                                                        1275   0.0  

>3x_Contig1647 
          Length = 14353

 Score = 1275 bits (643), Expect = 0.0
 Identities = 700/715 (97%), Gaps = 3/715 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tcaatctgctgtaaatattcttggtaaggtatttcaacgaaagcttcatactccttgtat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 tcaatctgctgtaaatattcttggtaaggtatttcaacgaaagcttcatactccttgtat 1527

                                                                        
Query: 147  acaaattgggatgcaatgatttcttgttccttcactagatactgttccaatatggccttt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 acaaattgggatgcaatgatttcttgttccttcactagatactgttccaatatggccttt 1467

                                                                        
Query: 207  gcattgttgaactatgcgttcaattttttgtcttcaggagcatcaatgaaattcaacggt 266
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 gcattgttgaacaaggcgttcaattttttgtcttcaggagcatcaatgaaattcaacggt 1407

                                                                        
Query: 267  aactctcctacggagttaactggataatttgcaccaattaagtatgacattaaggatgca 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 aactctcctacggagttaactggataatttgcaccaattaagtatgacattaaggatgca 1347

                                                                        
Query: 327  atatctgcttggttaacatcatttctctttatgtcagcaagattccaattttcagtataa 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 atatctgcttggttaacatcatttctctttatgtcagcaagattccaattttcagtataa 1287

                                                                        
Query: 387  ttatcaaaaattggagcttgatttttgactggtttgtttataccggcaccccatgcgact 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 ttatcaaaaattggagcttgatttttgactggtttgtttataccggcaccccatgcgact 1227

                                                                        
Query: 447  aagggtgtacgggtattatttggatgaccatcaccatgagaaccaaaagcactcattccg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aagggtgtacgggtattatttggatgaccatcaccatgagaaccaaaagcactcattccg 1167

                                                                        
Query: 507  tgatcggccgtgaagatgaaggcggtgtcttcatcatcgaaaaattcatgaaccttttcc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 tgatcggccgtgaagatgaaggcggtgtcttcatcatcgaaaaattcatgaaccttttcc 1107

                                                                        
Query: 567  accagtaatttcacctccttatcaatatatttcacgttgtcataatattcagctgagtaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 accagtaatttcacctccttatcaatatatttcacgttgtcataatattcagctgagtaa 1047

                                                                        
Query: 627  ggtctgttagaatgtgccgccgtattacagcctaaaaggtgtagaaaaaatacgttttcc 686
            ||||||| ||||||  | ||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1046 ggtctgtaagaatggccggccgtatcacagcctaaaaggtgtagaaaaaatacg-tttcc 988

                                                                        
Query: 687  atcttgttttatttcagttttcagggtcttattggattttggattggtgaatagctcata 746
            |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct: 987  atcttgttttatttcagtttccagggtcttattggattttgtattgttgaatagctcata 928

                                                                   
Query: 747  aatatgtttgaaaacaaatgcatccaattcgatggaaagattgagttaaaatctt 801
             |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 927  gatatgtctgaaaacaaatgcatccaattcgatgg-aagattgag-taaaatctt 875


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7926
Number of Sequences: 1807
Number of extensions: 7926
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)