BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB07RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1427 0.0
>3x_Contig1681
Length = 11798
Score = 1427 bits (720), Expect = 0.0
Identities = 768/776 (98%), Gaps = 6/776 (0%)
Strand = Plus / Minus
Query: 44 gcttatctacagacatctgacggaagccagaaatcgcctagcgaaattggatcatttgtt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 gcttatctacagacatctgacggaagccagaaatcgcctagcgaaattggatcatttgtt 4822
Query: 104 ctgaaatatttgaagggagttgcagagaaatatctagaggagacagtgaataaggcagtc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 ctgaaatatttgaagggagttgcagagaaatatctagaggagacagtgaataaggcagtc 4762
Query: 164 attacggtccctgcttacttcaatgattctcaaagacaggcaacaaaagatgctggaacc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 attacggtccctgcttacttcaatgattctcaaagacaggcaacaaaagatgctggaacc 4702
Query: 224 atggctggtttgaaagttatgcgtgttgttaatgagcctacagctgccgcgctaagtttc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4701 atggctggtttgaaagttatgcgtgttgttaatgagcctacagctgccgcgctaagtttc 4642
Query: 284 ggactagatagcaaaaatgatggtatcattgcagtttatgatcttggtggtggtacattt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4641 ggactagatagcaaaaatgatggtatcattgcagtttatgatcttggtggtggtacattt 4582
Query: 344 gatatctctatcttagatattgaggatggtgtctttgaagttagagccaccaatggtgac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4581 gatatctctatcttagatattgaggatggtgtctttgaagttagagccaccaatggtgac 4522
Query: 404 acccacttaggtggtgaggatttcgataatgtcgtagtaaactacgtcattgacaaattt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4521 acccacttaggtggtgaggatttcgataatgtcgtagtaaactacgtcattgacaaattt 4462
Query: 464 gtggaacagaatccttctttgaaaagagaggatattgtggcaaatagagagctgatgcaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4461 gtggaacagaatccttctttgaaaagagaggatattgtggcaaatagagagctgatgcaa 4402
Query: 524 agaattaaagatgcatcagaaactgctaagatcaggttatcacatgtcaaagaaacaaat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4401 agaattaaagatgcatcagaaactgctaagatcaggttatcacatgtcaaagaaacaaat 4342
Query: 584 attgaaattccattcgcttatgaaaataaacacatcaatgttccattaaaagaggtagaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4341 attgaaattccattcgcttatgaaaataaacacatcaatgttccattaaaagaggtagaa 4282
Query: 644 cttgataacattaccatgcacttgatcgctaagacagttcctcctgtt-aaaaggcctta 702
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4281 cttgataacattaccatgcacttgatcgctaagacagttcctcctgttaaaaaggcctta 4222
Query: 703 aaagatgctgatattgacgccgaagatatagatgatgttattcttgttgggaggtatgac 762
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4221 aaagatgctgatattgacgccgaagatatagatgatgttattcttgtt-ggaggtatgac 4163
Query: 763 taaggatgccttaagattaggaccatttgttgcaaggtttgttcggaccaaaaccc 818
| |||||||| ||||||||||| || ||||||| |||||||||||||| |||||||
Sbjct: 4162 t-aggatgcc-taagattagga-caattgttgc-aggtttgttcggacaaaaaccc 4111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7071
Number of Sequences: 1807
Number of extensions: 7071
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)