BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB08FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 1396 0.0
>3x_Contig1702
Length = 15454
Score = 1396 bits (704), Expect = 0.0
Identities = 740/748 (98%), Gaps = 3/748 (0%)
Strand = Plus / Plus
Query: 89 ttcttcaacgcagtcgtttcagtttttgaaactgttagagaatctaccagtttcttcctt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5923 ttcttcaacgcagtcgtttcagtttttgaaactgttagagaatctaccagtttcttcctt 5982
Query: 149 cttttaaggatatggaatagttcccataaaataaagttatgtttcaactgatctctaatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5983 cttttaaggatatggaatagttcccataaaataaagttatgtttcaactgatctctaatt 6042
Query: 209 tctaaactctttttatattgctcatcccgttggacaccttctttaaaacttttcaaatcg 268
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043 tctaaactcgttctatattgctcatcccgttggacaccttctttaaaacttttcaaatcg 6102
Query: 269 ttttgcacttttttccttgaattatgagcgtctgtgaattcagctaaagccagcttatgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6103 ttttgcacttttttccttgaattatgagcgtctgtgaattcagctaaagccagcttatgc 6162
Query: 329 tcttctttcaatttctcataatcattcttatagtttatagatccagaaacctgctccaat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6163 tcttctttcaatttctcataatcattcttatagtttatagatccagaaacctgctccaat 6222
Query: 389 aatagcgtcaatgattctggtccctgagaagcgattctttcgacatcaccttggaaaacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 aatagcgtcaatgattctggtccctgagaagcgattctttcgacatcaccttggaaaacc 6282
Query: 449 aaaaagtttttcgccttgaccaagatgttttcggattctaattcctcgttatatttttta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6283 aaaaagtttttcgccttgaccaagatgttttcggattctaattcctcgttatatttttta 6342
Query: 509 tagctcacagctctatcgttgattttgtaaacgctatcaccagatgtattgatggttctt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 tagctcacagctctatcgttgattttgtaaacgctatcaccagatgtattgatggttctt 6402
Query: 569 gtgaattttgttggttcatcaagatcatctttttgatacacgcaactgacatatgcactt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 gtgaattttgttggttcatcaagatcatctttttgatacacgcaactgacatatgcactt 6462
Query: 629 cttggttcttcctccgaatatgtggcattctctggaccagcttccgaatcagcgtcggat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 cttggttcttcctccgaatatgtggcattctctggaccagcttccgaatcagcgtcggat 6522
Query: 689 cggtgcattctcttagcattgccgttatctggatcgccattttcaattctgcccctgtat 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 cggtgcattctcttagcattgccgttatctggatcgccattttcaattctgcccctgtat 6582
Query: 749 -ttaaatctacaagcgccgatgaccttaaactgattacttcttacacctaacacaaagga 807
| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 6583 atcaaatctacaagcgccgatgacctt-aactgattacttctcacacctaacacaaagga 6641
Query: 808 aatggcatccatccgtattcgatttacc 835
||||||||||||| | ||||||||||||
Sbjct: 6642 aatggcatccatcag-attcgatttacc 6668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7356
Number of Sequences: 1807
Number of extensions: 7356
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)