BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZB08RM1.SCF screened BAC_end
         (900 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1515   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1515 bits (764), Expect = 0.0
 Identities = 796/803 (99%), Gaps = 3/803 (0%)
 Strand = Plus / Plus

                                                                         
Query: 43    tataactcca-ggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagac 101
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12569 tataactccaaggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagac 12628

                                                                         
Query: 102   gcgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattgaata 161
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12629 gcgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattgaata 12688

                                                                         
Query: 162   ttttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgccag 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12689 ttttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgccag 12748

                                                                         
Query: 222   attccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacg 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12749 attccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacg 12808

                                                                         
Query: 282   taaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaa 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12809 taaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaa 12868

                                                                         
Query: 342   tgggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaataag 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12869 tgggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaataag 12928

                                                                         
Query: 402   gacctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgt 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12929 gacctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgt 12988

                                                                         
Query: 462   tcctagatattccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaagaaaa 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12989 tcctagatattccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaagaaaa 13048

                                                                         
Query: 522   cagtcaaataattaccttttaccttgtaatcaccaaaaaacacaacacaaaacacaaaac 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13049 cagtcaaataattaccttttaccttgtaatcaccaaaaaacacaacacaaaacacaaaac 13108

                                                                         
Query: 582   actaaccaacagccttaggaaaaccaactactaatacactgcanactcttttctatcttc 641
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13109 actaaccaacagccttaggaaaaccaactactaatacactgcaaactcttttctatcttc 13168

                                                                         
Query: 642   tagtaccacgctaaggacaattttggcgcgctgctccaaattatctctctagaaaatcca 701
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13169 tagtaccacgctaaggacaattttggcgcgctgctccaaattatctctctagaaaatcca 13228

                                                                         
Query: 702   tgtgccgatcttaaatacattctctatacaggaaaacctcttattctaaagcttttttta 761
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13229 tgtgccgatcttaaatacattctctatacaggaaaacctcttattctaaagcttttttta 13288

                                                                         
Query: 762   tataaagaaatcctcgaaggcctttaagtgaaatgtgaaaaatgtg-aaatgaacttacc 820
             |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 13289 tataaagaaatcctcgaaggcctttaagtgaaatgtgaaaaatgtgaaaatgaactaacc 13348

                                    
Query: 821   gaacaagatgggggaaagcgcat 843
             |||| |||  |||||||||||||
Sbjct: 13349 gaac-agaatggggaaagcgcat 13370


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6445
Number of Sequences: 1807
Number of extensions: 6445
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)