BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB09FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 842 0.0
>3x_Contig1777
Length = 26319
Score = 842 bits (425), Expect = 0.0
Identities = 499/517 (96%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 89 aacatttgttccacatcgttctttattatctggtttacccaatcctctcaacatctttgc 148
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 aacatttgttccacatc-ttctttattatctggtttacccaatcctctcaacatctttgc 2518
Query: 149 aagatttgattctgatatcattccatttccatcgtcatctattagttggaatgcttcctg 208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2517 aagatttgattctgatatcattccatctccatcgtcatctattagttggaatgcttcctg 2458
Query: 209 cattttcttgtgcttcacttgtgtaaactgggaaaaagtgaccgaactactcttattcat 268
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 cattttcttgatctgctcttgtgtaaactgggaaaaagtgaccgaactactcttattcat 2398
Query: 269 cgcgaagctagtaaacttgttctcactattccaatgtatataaagatccaacactgacct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 cgcgaagctagtaaacttgttctcactattccaatgtatataaagatccaacactgacct 2338
Query: 329 ttatttgctaaagtacccgttgtctctgtaacgagatgctattctgtgttttttggttca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 ttatttgctaaagtacccgttgtctctgtaacgagatgctattctgtgttttttggttca 2278
Query: 389 gatgcatatgtctaaaacgtaaatagtgaataatctttctaacttttctagatttcgaac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 gatgcatatgtctaaaacgtaaatagtgaataatctttctaacttttctagatttcgaac 2218
Query: 449 aaaaaactaagcagagccaatctacagaattcaattgactacattgat-ttagtaaaagt 507
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 2217 aaaaaactaagcagagccaatctacagaattcaattgactaca-tgatattagtaaaagt 2159
Query: 508 taagagaaaagattcctaagctactgcataccatcgggaaactgaccccatttttacatc 567
|||||||||||| |||||||||||||||||||||| ||||||||||| || | |||||
Sbjct: 2158 caagagaaaagatacctaagctactgcataccatcgtgaaactgacccatttataacatc 2099
Query: 568 aatatccctgatttagactttcttggcgattaattga 604
||||| |||||| ||||| ||||||||||||||||||
Sbjct: 2098 aatat-cctgatatagac-ttcttggcgattaattga 2064
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,137
Number of Sequences: 1807
Number of extensions: 14137
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)