BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB09RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1122 0.0
3x_Contig1346 165 2e-40
>3x_Contig1707
Length = 16216
Score = 1122 bits (566), Expect = 0.0
Identities = 597/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Plus
Query: 118 aaagttcatagcgtagagaccaacgtctttctttctagatttaatctcagaggcttttac 177
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aaagttgataggttagagaccaacgtctttctttctagatttaatctcagaggcttttac 219
Query: 178 tttatcatatggatcggaatcgatgattagaatgttgatattctcattagaagcgagcac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tttatcatatggatcggaatcgatgattagaatgttgatattctcattagaagcgagcac 279
Query: 238 atggtggacaccagactgaccgagatcgtaagaccaagcatctgatccgacaagccatga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atggtggacaccagactgaccgagatcgtaagaccaagcatctgatccgacaagccatga 339
Query: 298 agacttaaatttcaacgcctccactgatccaatttttttcaatagagagagagcagtaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agacttaaatttcaacgcctccactgatccaatttttttcaatagagagagagcagtaga 399
Query: 358 tgaatgatcgttgttttgtagtaactcgaatagctcttctgcaactttgtttcccttttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgaatgatcgttgttttgtagtaactcgaatagctcttctgcaactttgtttcccttttc 459
Query: 418 aatcgtggactcttctagagcaacattattcaacttaatccattgatcaagaagttcaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aatcgtggactcttctagagcaacattattcaacttaatccattgatcaagaagttcaac 519
Query: 478 aattttctgaccatcacttgaagtatattctgaagcattcaatgatttattggccaatga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aattttctgaccatcacttgaagtatattctgaagcattcaatgatttattggccaatga 579
Query: 538 aatcaaggaatcacgttcttgcttttgcttcaaaaatagaccaaatccatattctgggtt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aatcaaggaatcacgttcttgcttttgcttcaaaaatagaccaaatccatattctgggtt 639
Query: 598 ggtgacattgacactttcgttgtcgtatttgttcaatacatctaagttccatttgaagag 657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 640 ggtgacattgacactttcgttgtcgtatttgttcaatacatctaagttcgatttgaagag 699
Query: 658 ttggtttaagacctttttataagcgaatt-cagtgaaagagcacctgcatttgaaattga 716
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||
Sbjct: 700 ttggtttaagaccttttcataagcgaattccagtgaaagagcacctgcaattgagattga 759
Query: 717 ttaacc 722
| ||||
Sbjct: 760 taaacc 765
>3x_Contig1346
Length = 6154
Score = 165 bits (83), Expect = 2e-40
Identities = 98/103 (95%)
Strand = Plus / Plus
Query: 47 gcttcgacaaatgatgtaagtagctgtgtgtatgatgaataaacagcaacagatgcgacg 106
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 6052 gcttcgacaaatgatgtaagtcgctgtgtgtatgacgaataaacagcaacagatgggacg 6111
Query: 107 taagcgttaccaaagttcatagcgtagagaccaacgtctttct 149
|||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 6112 taagcgttaccaaagttcatagcggagagacccacgtctttct 6154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7948
Number of Sequences: 1807
Number of extensions: 7948
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)