BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB10FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1207 0.0
>3x_Contig1581
Length = 11429
Score = 1207 bits (609), Expect = 0.0
Identities = 675/693 (97%), Gaps = 3/693 (0%)
Strand = Plus / Minus
Query: 84 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 10916
Query: 144 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 10856
Query: 204 aaaatgaaatattatgcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 263
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 aaaatgaaatatta-gcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 10797
Query: 264 tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10796 tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 10737
Query: 324 aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10736 aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 10677
Query: 384 aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10676 aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 10617
Query: 444 aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10616 aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 10557
Query: 504 atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10556 atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 10497
Query: 564 catagtggtcatagccccttgaactcttttctggtccgatgatggcacctgtaataggaa 623
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 10496 catagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaa 10437
Query: 624 ctgctactaaagtacccaatgcgacaacaaagtacattgtagaaatattttctttcgaat 683
|||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 10436 ctgctactaaagtaccaaatgcgacaacaaagtacattgtag-aatatcttcttccgaat 10378
Query: 684 tctttagtctttgagatttgttcacagcagacaagttaagatactgaagatactttcgga 743
|||| |||||||||||||||| |||||||||| || ||||||||||||||||||| ||||
Sbjct: 10377 tcttcagtctttgagatttgtccacagcagac-aggtaagatactgaagatacttccgga 10319
Query: 744 agaaaaatcattaatggcactgattgccaataa 776
|||||| ||| ||||||||||| ||| |||||
Sbjct: 10318 agaaaatccataaatggcactgaatgcgaataa 10286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7143
Number of Sequences: 1807
Number of extensions: 7143
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)