BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB10RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1188 1172 0.0
>3x_Contig1188
Length = 4443
Score = 1172 bits (591), Expect = 0.0
Identities = 632/642 (98%), Gaps = 4/642 (0%)
Strand = Plus / Plus
Query: 47 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3672 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 3731
Query: 107 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 3791
Query: 167 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 3851
Query: 227 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3852 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 3911
Query: 287 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3912 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 3971
Query: 347 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3972 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 4031
Query: 407 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4032 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 4091
Query: 467 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 4151
Query: 527 cggtaagtatatcattctttaaggggtggttctgtgcattctttccttaaatctgagttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 cggtaagtatatcattctttaaggggtggttctgtgcattctttccttaaatctgagttt 4211
Query: 587 tccctttattttatttttttatttttttttgaatgctgcagaaagactacgtccaaattc 646
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct: 4212 tccctttattttatttttt--attttttttgaatgctgcagaaggactacgt-caaattc 4268
Query: 647 attattattatcaataaagtttcttatattcatagctttcac 688
||||| ||||||||| ||| ||| ||||| ||||||||||||
Sbjct: 4269 attataattatcaat-aaggttcctatatccatagctttcac 4309
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,329
Number of Sequences: 1807
Number of extensions: 11329
Number of successful extensions: 276
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)