BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB11FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1348 0.0
>3x_Contig1669
Length = 15503
Score = 1348 bits (680), Expect = 0.0
Identities = 718/729 (98%), Gaps = 2/729 (0%)
Strand = Plus / Plus
Query: 86 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 6095
Query: 146 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6096 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 6155
Query: 206 gcgatcgttant-taantatctgtaattggattgcgtgagtagtagtagttctcttgaag 264
|||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6156 gcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctcttgaag 6215
Query: 265 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6216 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 6275
Query: 325 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6276 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 6335
Query: 385 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6336 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 6395
Query: 445 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6396 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 6455
Query: 505 ttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttcttattt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6456 ttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttcttattt 6515
Query: 565 caatttttctattggtggcaatagggtaaaaaaggagggagggtaatcagaatattctat 624
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6516 caatttttctattggtgacaatagggtaaaaaaggagggagggtaatcagaatattctat 6575
Query: 625 tctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttctacaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6576 tctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttctacaag 6635
Query: 685 aatatgacagcagtcattatactggaccttcttgtgctttagttatttaggtgatatgtt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6636 aatatgacagcagtcattatactggaccttcttgtgctttagttatttaggtgatatgtt 6695
Query: 745 tggattattatatgcagnattatgttaggtgtctttgaaggctaccccaattaaaagagt 804
|| |||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||||
Sbjct: 6696 tgaattattatatgcagaattatg-taggtgtctctgaaggctaccccaattaagagagt 6754
Query: 805 tgcccagca 813
||| |||||
Sbjct: 6755 tgcacagca 6763
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6917
Number of Sequences: 1807
Number of extensions: 6917
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)