BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB11RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1033 789 0.0
3x_Contig916 628 e-180
>3x_Contig1033
Length = 4240
Score = 789 bits (398), Expect = 0.0
Identities = 493/508 (97%), Gaps = 14/508 (2%)
Strand = Plus / Minus
Query: 369 attgttcatgactgtatcatgtcct-tgaagaaagccttccag-ctggtttctacaaacg 426
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 4224 attgttcatgactgtatcatgtcctatgaagaaagccttccagtctggtttctacaaacg 4165
Query: 427 caactattaacttgttagatacacaattgtcgttactgaagaacttgctcctattgcgtg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4164 caactattaacttgttagatacacaattgtcgttactgaagaacttgctcctattgcgtg 4105
Query: 487 accaaattcaaaattttgatattcaatacatttccaaagaaacttacctagacttttcgg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4104 accaaattcaaaattttgatattcaatacatttccaaagaaacttacctagacttttcgg 4045
Query: 547 gtctgctaaaaggtatcaatgatatcagaaggcgcacgatatcagtgttccagatgggtt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4044 gtctgctaaaaggtatcaatgatatcagaaggcgcacgatatcagtgttccagatgggtt 3985
Query: 607 ttgatactgtgcccaaaataataaacaacatggtggacgccagatctgagttaattgcag 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 ttgatactgtgcccaaaataataaacaacatggtggacgccagatctgagttaattgcag 3925
Query: 667 aactgcggaatacaatcaacggtatcacaaagactgctgcagatcagattaccaaagatt 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 aactgcggaatacaatcaacggtatcacaaagactgctgcagatcagattaccaaagatt 3865
Query: 727 acttgtcaatatcagaaactggggacaagttattgggaacaaaacatggnaggtcaggga 786
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 3864 acttgtcaatatcagaaactggggacaagttatt-ggaacaaaacatgg-aggtca-gga 3808
Query: 787 natcaatagaaaattaacttgggtatcccatattttgatcaaatcaggcaactttcatca 846
|||||||| |||||||||| ||||| ||||| ||||||||||||| ||||| |||||||
Sbjct: 3807 aatcaatag-aaattaactt-ggtat-ccata-tttgatcaaatca-gcaac-ttcatca 3754
Query: 847 ccaacggatgaaaggtcaaatcacattt 874
||||| |||||| ||||||||||||||
Sbjct: 3753 ccaac-gatgaa--gtcaaatcacattt 3729
>3x_Contig916
Length = 3568
Score = 628 bits (317), Expect = e-180
Identities = 329/332 (99%), Gaps = 1/332 (0%)
Strand = Plus / Plus
Query: 48 caattccaacatatcaaaattgatatgctattcaaacctattctcaaggaatgtcaatca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3238 caattccaacatatcaaaattgatatgctattcaaacctattctcaaggaatgtcaatca 3297
Query: 108 aggctaatctttagatctcaaatatatgtggaagagaacatcaacagttataaacctaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298 aggctaatctttagatctcaaatatatgtggaagagaacatcaacagttataaacctaaa 3357
Query: 168 gtagattcgtttatcatacgccatagaaaaacaccaaaagaggctaagaacaaagctaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3358 gtagattcgtttatcatacgccatagaaaaacaccaaaagaggctaagaacaaagctaac 3417
Query: 228 gatttagatgagatatcaacttcattcttccaattagatgagttcaattctgcatatcct 287
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3418 gatttagatgagatatcaacttcattcttccaattaggtgagttcaattctgcatatcct 3477
Query: 288 ccgctagtgtatggaattgccttactatctaagatataccaaatggttaactctactgtg 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3478 ncgctagtgtatggaattgccttactatctaagatataccaaatggttaactctactgtg 3537
Query: 348 tttgatgatattgcacacacgattgttcatga 379
|||||||||||||||||||||| |||||||||
Sbjct: 3538 tttgatgatattgcacacacga-tgttcatga 3568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7507
Number of Sequences: 1807
Number of extensions: 7507
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)