BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZC01FM1.SCF screened BAC_end (981 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig419 192 9e-49 >3x_Contig419 Length = 1943 Score = 192 bits (97), Expect = 9e-49 Identities = 163/179 (91%), Gaps = 5/179 (2%) Strand = Plus / Minus Query: 560 tatggtatctgcatgttatctgtt-cttcgtaatctaaggaatgaatcagtagacaggca 618 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1943 tatggtatctgcatgt-atctgtttcttcgtaatctaaggaatgaatcagtagacaggca 1885 Query: 619 cagaaaacggctgcaaaaaacctaaagaacgggcacaattattgaaaagaaattaaacct 678 |||| | ||||||| ||||||||| |||||| |||||||||||||| |||||||||||| Sbjct: 1884 caganacgggctgcanaaaacctaaggaacggccacaattattgaaatgaaattaaacct 1825 Query: 679 tagatggtcatccgcttaaaatgagtgacataatgcgctttgatttaaagtttaaggct 737 |||||| ||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 1824 tagatgtctatcggc-taaaatgagtgacataatgc-ctttgattt-aagtttaaggct 1769 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6525 Number of Sequences: 1807 Number of extensions: 6525 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 981 length of database: 10,358,551 effective HSP length: 16 effective length of query: 965 effective length of database: 10,329,639 effective search space: 9968101635 effective search space used: 9968101635 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)