BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC01RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1138 0.0
>3x_Contig1801
Length = 57606
Score = 1138 bits (574), Expect = 0.0
Identities = 622/634 (98%), Gaps = 3/634 (0%)
Strand = Plus / Plus
Query: 77 ctttaagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcagt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41772 ctttaagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcagt 41831
Query: 137 agtcaatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaatttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41832 agtcaatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaatttg 41891
Query: 197 acaaaatgagctctcaaccgcaagatatagtaaaggagatggcaaattctttttttaaca 256
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 41892 acaaaatgagctctcaaccgcaagatatagtaaaggagatggcaaattctcttcgtaaca 41951
Query: 257 gcagatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaaga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41952 gcagatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaaga 42011
Query: 317 ttgctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatctt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42012 ttgctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatctt 42071
Query: 377 gtggtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42072 gtggtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgatg 42131
Query: 437 aaagaatattggacgaacagataaaggcattggaacaaaagagacattacctacagacca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42132 aaagaatattggacgaacagataaaggcattggaacaaaagagacattacctacagacca 42191
Query: 497 cagtcgataacacggtagagagtttgagaagagtcattggaaattaaatcaactactgag 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42192 cagtcgataacacggtagagagtttgagaagagtcattggaaattaaatcaactactgag 42251
Query: 557 tcggcattgacaggggtttttgtatgggtcaagcaatgtgggaagatagtacccttaaaa 616
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42252 tcggcatcgacaggggtttttgtatgggtcaagcaatgtgggaagatagtacccttaaaa 42311
Query: 617 gttgtattcatcatagaatagagttaaagtatttatcagtggtaatgttatatataggct 676
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct: 42312 gtcgtattcatcatagaatagagttaaagtatttagcagtggtaatgttatatata-gtt 42370
Query: 677 gcacattaaacaattctctattatcagaatacat 710
| ||||| || ||||||||||| |||||||||||
Sbjct: 42371 gtacatt-aagaattctctatt-tcagaatacat 42402
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9261
Number of Sequences: 1807
Number of extensions: 9261
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)