BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZC02FM1.SCF screened BAC_end
         (887 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1548                                                        1308   0.0  

>3x_Contig1548 
          Length = 9830

 Score = 1308 bits (660), Expect = 0.0
 Identities = 706/716 (98%), Gaps = 4/716 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 251

                                                                       
Query: 146 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 311

                                                                       
Query: 206 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 371

                                                                       
Query: 266 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 431

                                                                       
Query: 326 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 491

                                                                       
Query: 386 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 551

                                                                       
Query: 446 ctctcggctacaagagtttgaactgcccagttacgtgaataatcttaaggtaactaattt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctctcggctacaagagtttgaactgcccagttacgtgaataatcttaaggtaactaattt 611

                                                                       
Query: 506 cgatttaagtactatgcctccaaatgttatattaaaacagatggatgatcctttagatga 565
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cgatttaggtactatgcctccaaatgttatattaaaacagatggatgatcctttagatga 671

                                                                       
Query: 566 gttttattcttatctgttacaagaaggagatatttcaaaagaagctgcgaaggataagaa 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gttttattcttatctgttacaagaaggagatatttcaaaagaagctgcgaaggataagaa 731

                                                                       
Query: 626 cactgatgtgcaactattagtggaacttgattataaaggtgatatgagcattgaattgtc 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cactgatgtgcaactattagtggaacttgattataaaggtgatatgagcattgaattgtc 791

                                                                       
Query: 686 agctgatcttgttcttaattacccgagcccgcagttcatgattttaccagtttagctacg 745
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 792 agctgatcttgttcttaattacccgagcccgcagttcatgattttaccagttaagctacg 851

                                                                   
Query: 746 aattaagtgatttttggcatgcacttgcttatgccctgcttccatttttgaagaaa 801
           || ||||||| | ||||||||||| |||||||| ||||||  ||| ||||||||||
Sbjct: 852 aa-taagtga-tattggcatgcac-tgcttatg-cctgctcgcatatttgaagaaa 903


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6757
Number of Sequences: 1807
Number of extensions: 6757
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)