BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC02RM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig451 1513 0.0
>3x_Contig451
Length = 1879
Score = 1513 bits (763), Expect = 0.0
Identities = 809/823 (98%), Gaps = 1/823 (0%)
Strand = Plus / Plus
Query: 48 tttgaagatatgattaagactaagaggtttgagttgaaagacgttccagaaaactcaata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttgaagatatgattaagactaagaggtttgagttgaaagacgttccagaaaactcaata 310
Query: 108 atgtgatgttaaaaagcataaacaaagtatgatgtgtgtataaaaatttaaataatgata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgtgatgttaaaaagcataaacaaagtatgatgtgtgtataaaaatttaaataatgata 370
Query: 168 tgaaaggagaaaaaaatacagatcagaactattgctacagatatagaagcaatagtctct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgaaaggagaaaaaaatacagatcagaactattgctacagatatagaagcaatagtctct 430
Query: 228 ttgatatatgcttcgaacagttaacgtcgctcgttcagttgatctcccattctaataagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgatatatgcttcgaacagttaacgtcgctcgttcagttgatctcccattctaataagt 490
Query: 288 tgtataatggcccaagtggtactattttttttaaattttttcttgtgtttcctctgtaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgtataatggcccaagtggtactattttttttaaattttttcttgtgtttcctctgtaat 550
Query: 348 aatactcatattgtattgtactgtgtattttttttttggtatgtggttaggttatttttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aatactcatattgtattgtactgtgtattttttttttggtatgtggttaggttatttttt 610
Query: 408 tgataaagatgaatgataatggatagacaagttaacaaaaaaatagggatgtagcggagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgataaagatgaatgataatggatagacaagttaacaaaaaaatagggatgtagcggagg 670
Query: 468 aaagtccgacaaagcagccatccatcaagacggcttcattgacgtttatctagaacggga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaagtccgacaaagcagccatccatcaagacggcttcattgacgtttatctagaacggga 730
Query: 528 accaatgcatttgttcgtgatgtaggagtaaagggataatgcccgaaagaaataatacaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 accaatgcatttgttcgtgatgtaggagtaaagggataatgcccgaaagaaataatacaa 790
Query: 588 ataaatattatgttatttgtgattttttctacttcttttcgtaaacttcacctcttcttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ataaatattatgttatttgtgattttttctacttcttttcgtaaacttcacctcttcttg 850
Query: 648 cggcgaacttagcagcttgatcaacattgtccttgaccacagcgattctcatggtagcca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cggcgaacttagcagcttgatcaacattgtccttgaccacagcgattctcatggtagcca 910
Query: 708 agatgttgtgagcggcgttagaatgcaagtagacacaaccgtttgaagccttagtagcat 767
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 911 agatgttgtgagcggcgttagaatgcaagtagacaccaccgttgaaagccttagtagcat 970
Query: 768 ctttacccaatgaagcctgaatcaaagtcttaccggctgggttgttaatgatatatcca- 826
|||||||||||||||||||||||||||||| |||| |||||| | | |||||||||||
Sbjct: 971 ctttacccaatgaagcctgaatcaaagtctcaccgcctgggtgttcagtgatatatccac 1030
Query: 827 ttacatcgtggacgataccccggattacgaccaaaccgttatt 869
| |||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1031 taacatcgtggacgatacccgagatgacgaccaaaccgttatt 1073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8652
Number of Sequences: 1807
Number of extensions: 8652
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)