BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC03RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1445 0.0
3x_Contig1585 240 4e-63
3x_Contig352 236 6e-62
>3x_Contig1475
Length = 10676
Score = 1445 bits (729), Expect = 0.0
Identities = 786/798 (98%), Gaps = 9/798 (1%)
Strand = Plus / Plus
Query: 53 cacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttctacc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8519 cacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttctacc 8578
Query: 113 ttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagatgc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8579 ttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagatgc 8638
Query: 173 atccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttcaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8639 atccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttcaa 8698
Query: 233 tgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatgtaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8699 tgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatgtaa 8758
Query: 293 tgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaaaac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8759 tgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaaaac 8818
Query: 353 acgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataaccat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8819 acgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataaccat 8878
Query: 413 gaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttcttg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879 gaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttcttg 8938
Query: 473 agcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattccagc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8939 agcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattccagc 8998
Query: 533 ttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaataccgat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8999 ttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaataccgat 9058
Query: 593 caaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttatcctt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9059 caaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttatcctt 9118
Query: 653 gttggcgttgaattccgattcgttaaaacttttcttagcaaaggctaacactcttaaccc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9119 gttggcgttgaattccgattcgttaaaacttttcttagcaaaggctaacactcttaaccc 9178
Query: 713 ttcactagacagggtgtcaacgttcttttgaatggtttccaaatcttccttactcaaagg 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9179 ttcactagacagggtgtcaacgttcttttgaatggtttccaaatcttccttactcaaa-g 9237
Query: 773 gcgatggttttgccatcaggtggtgggaataccaaggagtcacaacatttgccaacactc 832
||||||| |||||||||||||| || ||||| ||||||||||||||| ||||||||
Sbjct: 9238 gcgatgg-tttgccatcaggtg--tggtatacc-aggagtcacaacatt--gcaacactc 9291
Query: 833 tntttcaaatgcaccttt 850
||||||||||||||||
Sbjct: 9292 --tttcaaatgcaccttt 9307
>3x_Contig1585
Length = 11490
Score = 240 bits (121), Expect = 4e-63
Identities = 208/237 (87%)
Strand = Plus / Minus
Query: 53 cacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttctacc 112
|||||| ||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||||
Sbjct: 290 cacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttctacc 231
Query: 113 ttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagatgc 172
|||||| ||||| || |||||||| ||||||||||| || ||||| || |||||||| ||
Sbjct: 230 ttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcagacgc 171
Query: 173 atccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttcaa 232
|||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||| |||||
Sbjct: 170 atccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatcttcaa 111
Query: 233 tgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatg 289
|||||||||||||| |||||||| |||||||||||||||||| || ||| ||||||
Sbjct: 110 cgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatg 54
>3x_Contig352
Length = 1459
Score = 236 bits (119), Expect = 6e-62
Identities = 260/307 (84%)
Strand = Plus / Plus
Query: 454 gtaagataccaacttcttgagcaatggacttggcagtaccagggaagtcacctgttaaca 513
||||||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 514 tatgcacattgattccagcttgatgacattttttaacagcggcaagtgattcttgtcttg 573
|||| || ||||| |||||| | ||||||||||||||||| ||||| ||||| | ||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 574 gtggatcataaataccgatcaaccctaaaaatgttaatttacattcgacaaagtcacgtt 633
||||||| || ||||||| || || |||||||||| ||| |||||||||||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 634 ccttcaatagtttatccttgttggcgttgaattccgattcgttaaaacttttcttagcaa 693
||||||||||||| ||||||||| | |||| ||||||||||| ||||||| ||||
Sbjct: 199 ccttcaatagtttgtccttgttgatagtaaattgtgattcgttaaaggttttcttggcaa 258
Query: 694 aggctaacactcttaacccttcactagacagggtgtcaacgttcttttgaatggtttcca 753
| ||||||||||||| ||| ||||| || | ||| ||||| |||||||||| |||||||
Sbjct: 259 aagctaacactcttagcccctcacttgataaggtatcaacattcttttgaacagtttcca 318
Query: 754 aatcttc 760
||||||
Sbjct: 319 gatcttc 325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6830
Number of Sequences: 1807
Number of extensions: 6830
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 3
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)