BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1518 1053 0.0
>3x_Contig1518
Length = 11021
Score = 1053 bits (531), Expect = 0.0
Identities = 588/603 (97%), Gaps = 3/603 (0%)
Strand = Plus / Minus
Query: 88 cgaaagcgcaaggtaagaaattttcgacgctaccgtaacgtaacgtaacgtatcgtgtca 147
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8778 cgaaagcgcaagggaagaaattttcgacgctaccgtaacgtaacgtaacgtatcgtgtca 8719
Query: 148 gcactgagtttcgcacttaggtggtggtggaatttttcagtttttagtttcgagagattt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718 gcactgagtttcgcacttaggtggtggtggaatttttcagtttttagtttcgagagattt 8659
Query: 208 attactcttattcttttttcaaagtgataatatgaatatcaatattaatacgtttggaaa 267
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8658 attactcttatcctgctttcaaagtgataatatgaatatcaatattaatacgtttggaaa 8599
Query: 268 ttcgaatctgaattcgaatgcgaattcaaatggttataatcccagttcagttgcaagcac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8598 ttcgaatctgaattcgaatgcgaattcaaatggttataatcccagttcagttgcaagcac 8539
Query: 328 tgctaacacgccgtatttcgtgtcgaatggtaatggtggtaatgggcctggaactactgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8538 tgctaacacgccgtatttcgtgtcgaatggtaatggtggtaatgggcctggaactactgg 8479
Query: 388 ggcctcgttagtaacgctcccatccattaaaacgctactgaataagttagagggaacgtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8478 ggcctcgttagtaacgctcccatccattaaaacgctactgaataagttagagggaacgtc 8419
Query: 448 ttctgccacttcttctcagacaaatgacgttcagtacacaatgggtcaaactgaaatgaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8418 ttctgccacttcttctcagacaaatgacgttcagtacacaatgggtcaaactgaaatgaa 8359
Query: 508 cccacgtataaggacgtcaatatcaacgtcttctttcgtctccttcgtcgaattcaagtt 567
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8358 cccacgtataaggacgtcaatatcaacgtcttc-ttcgtctccttcgtcgaattcaagtt 8300
Query: 568 cgagcccgcttacaggcacttggcataacaaccaaaaaacagcccgcagcaaccaatacc 627
|||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct: 8299 cgagcccgcttacaggcactggcaataacaaccaaaaaacagccggcagcaacc-atacc 8241
Query: 628 caagatgggcaggtgctgcccccattaaggtgcagatctaatttcgaacccaatggatcc 687
|||||||| ||||||||||||||||||||| |||||||| ||| |||| |||||||||||
Sbjct: 8240 caagatggacaggtgctgcccccattaaggggcagatctcattccgaa-ccaatggatcc 8182
Query: 688 gct 690
|||
Sbjct: 8181 gct 8179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6857
Number of Sequences: 1807
Number of extensions: 6857
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)