BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC04RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1140 0.0
>3x_Contig1771
Length = 25932
Score = 1140 bits (575), Expect = 0.0
Identities = 618/627 (98%), Gaps = 4/627 (0%)
Strand = Plus / Plus
Query: 77 gctttgttggttgatggaaccatactataattctcttgtgtagcactaaaagcacagttt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 gctttgttggttgatggaaccatactataattctcttgtgtagcactaaaagcacagttt 1573
Query: 137 tatattggctactggataagttggctaaatttagacagtgcaaccaatttgtttcgaggt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 tatattggctactggataagttggctaaatttagacagtgcaaccaatttgtttcgaggt 1633
Query: 197 tggatttaaacttagcatcattctcgatggcttgtgggggcacagatacgaatatttcca 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 tggatttaaacttagcatcattctcgatggcttgtgggggcacagatacgaatatttcca 1693
Query: 257 agtctggtgatccctgaacatcgttgttgcataaagccaaccatttagacatcaaaattt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 agtctggtgatccctgaacatcgttgttgcataaagccaaccatttagacatcaaaattt 1753
Query: 317 cgtcagatgtttggccatcaagttctggtaacaacgatatcagttctgattgtgtgtaga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 cgtcagatgtttggccatcaagttctggtaacaacgatatcagttctgattgtgtgtaga 1813
Query: 377 attgaatatcgaaattcttcttataataggcttccacaaatagattaaacacgggattct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 attgaatatcgaaattcttcttataataggcttccacaaatagattaaacacgggattct 1873
Query: 437 cgctctgaccatctttgaaaccgatatcaccttcaaagttacaatggaaaagagccacta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 cgctctgaccatctttgaaaccgatatcaccttcaaagttacaatggaaaagagccacta 1933
Query: 497 gtaacgatcttaaagtcttatttggaaagaaaggactatttggtttcgaagcccaatata 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1934 gtaacgatcttaaagtcttatttggaaagaaaggactatttggtttcgaagcccaatata 1993
Query: 557 tcgattcatggtgaagcatttttcatatatgagtccaaacaatctaaactcaacgagtta 616
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1994 tcgattcatggtgaagca-ttttcatatatgagtccaaacaatctaaactcaacgagtta 2052
Query: 617 acttcatgcaaagatgttatgatagtcaataactttaacctta-aatttaaattatagtc 675
||||||||||||||||| ||||||| ||||||| ||||||||| |||||||| |||| |
Sbjct: 2053 acttcatgcaaagatgtaatgatagccaataac-ttaaccttataatttaaa-tatattt 2110
Query: 676 tcttacaccatttaaagaatttctttt 702
|||||||||||| ||||||||||||||
Sbjct: 2111 tcttacaccattcaaagaatttctttt 2137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9351
Number of Sequences: 1807
Number of extensions: 9351
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)