BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC05FM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 1334 0.0
>3x_Contig1449
Length = 7865
Score = 1334 bits (673), Expect = 0.0
Identities = 691/697 (99%)
Strand = Plus / Plus
Query: 85 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6743 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 6802
Query: 145 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6803 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 6862
Query: 205 catacagtttggttttggacatggttgtcccctcaaatacgaggagcagtactttgttgt 264
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6863 catacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttgttgt 6922
Query: 265 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6923 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 6982
Query: 325 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6983 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 7042
Query: 385 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7043 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 7102
Query: 445 gttaatttttccatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 504
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103 gttaattttttcatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 7162
Query: 505 gtaagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7163 gtaagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcat 7222
Query: 565 accagcaagctgtttcctattatgagtgtcattttctctacgttcacgctccctttgctt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7223 accagcaagctgtttcctattatgagtgtcattttctctacgttcacgctccctttgctt 7282
Query: 625 acgatcacgttcttttctggcctgcttggaacgttccattttcaactcttctggagaaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7283 acgatcacgttcttttctggcctgcttggaacgttccattttcaactcttctggagaaag 7342
Query: 685 aacgatgtactcgacgctttcattgtcgtactttcgacgacaagccggacatcgaccatt 744
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7343 aacgatgtactcgacgctttcatcgtcgtactttcgacgacaagccggacatcgaccatt 7402
Query: 745 aagctcaagattttgacgaattttgttataacaaaac 781
||||||| ||||||||||||| |||||||||||||||
Sbjct: 7403 aagctcaggattttgacgaatattgttataacaaaac 7439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6123
Number of Sequences: 1807
Number of extensions: 6123
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)