BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC06FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1005 720 0.0
3x_Contig1403 361 2e-99
>3x_Contig1005
Length = 3979
Score = 720 bits (363), Expect = 0.0
Identities = 432/451 (95%), Gaps = 3/451 (0%)
Strand = Plus / Minus
Query: 388 ggacttcaaagtgtttcattatgagggcttcgaaaagacaagaaataaattcaacactga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 ggacttcaaagtgtttcattatgagggcttcgaaaagacaagaaataaattcaacactga 3909
Query: 448 ttcaccggcagaaatagtagaattgatgtctcaatacgatgttgtgatatgttcatacta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ttcaccggcagaaatagtagaattgatgtctcaatacgatgttgtgatatgttcatacta 3849
Query: 508 tacgatgtctgcagaagttcactatgctgagtttagcaaaatacaaagacctagtagaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 tacgatgtctgcagaagttcactatgctgagtttagcaaaatacaaagacctagtagaga 3789
Query: 568 ctctactagacgatacgattacacttctccattatctattatggaattccataggggtca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3788 ctctactagacgatacgattacacttctccattatctattatggaattccata-gggtca 3730
Query: 628 ttttggatgaggcacagctacttggaggccgtatgaccaatgcctcacgctgtacaagtc 687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3729 ttttggatgaggcacagctacttggaggcggtatgaccaatgcctcacgctgtacaagtc 3670
Query: 688 taattcacagggttcatacttgggggggtgtcaggtacccctgtggagtgggatttccat 747
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 3669 taatccacagggttcatactt-ggggggtgtcaggtacccctgtggagtggtatttccat 3611
Query: 748 atttgggaaattttttgttaactacagaatcctccatttcaggttttaaaccagaatgtg 807
||| | || |||||| ||| ||||||| | |||||| ||||||||| |||||||||||
Sbjct: 3610 attcgtgatatttttgtttacctacagatccatccattccaggttttagaccagaatgtg 3551
Query: 808 gttaaccctgttttgcacttccaatgccttt 838
|||||| ||| | ||||||||||||||||||
Sbjct: 3550 gttaacgctg-tctgcacttccaatgccttt 3521
>3x_Contig1403
Length = 7711
Score = 361 bits (182), Expect = 2e-99
Identities = 194/198 (97%)
Strand = Plus / Plus
Query: 86 actggttacattctgccaatggaggaggcatggaaaatatatgaggaatggttctctgac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 actggttacattctgccaatggaggaggcatggaaaatatatgaggaatggttctctgac 7573
Query: 146 ccttccagtgggaaaaaggctagaggtgtacttgctgatgagatgggtctagggaaaact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 ccttccagtgggaaaaaggctagaggtgtacttgctgatgagatgggtctagggaaaact 7633
Query: 206 atcgaaattctttttttgatctctactaatgtacggaatctatcaaatgagtcaagcagt 265
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7634 atcgaaattctgactttgatctctacttatgtacggaatctatcaaatgagtcaagcagt 7693
Query: 266 ttcgtttctccaataaat 283
||||||||||||||||||
Sbjct: 7694 ttcgtttctccaataaat 7711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6197
Number of Sequences: 1807
Number of extensions: 6197
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)