BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZC07FM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1726                                                         856   0.0  

>3x_Contig1726 
          Length = 20144

 Score =  856 bits (432), Expect = 0.0
 Identities = 492/508 (96%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                        
Query: 115  tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9261 tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 9202

                                                                        
Query: 175  tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9201 tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 9142

                                                                        
Query: 235  gactgtaggatcttcttccaaaacttcatcaggacccaaaggcttagataaatgtggcaa 294
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9141 gactgtaggatcagcttccaaaacttcatcaggacccaaaggcttagataaatgtggcaa 9082

                                                                        
Query: 295  ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9081 ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 9022

                                                                        
Query: 355  ttgttgatgcttcttttccagaaactcatcgttctcaatgttcccatctaattcttcttc 414
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9021 ttgttgttgcttcttttccagaaactcatcgttctcaatgtttccatctaattcttcttc 8962

                                                                        
Query: 415  attatcttcttcatcgccaattccgatgatttcgccatcactctcgaaatcattcaccat 474
            |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 8961 attatcttcttcatcgtcaatttcgatgatttcgccatcactctcgaaatca-tcaccat 8903

                                                                        
Query: 475  aagggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccg 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8902 aagggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccg 8843

                                                                        
Query: 535  acggtacttcaccagcctttggcttagaatggacaatctctatcatcgacgttattctag 594
            | |||||||||||||||| || ||||||||||||||| || |||||||||||| ||||||
Sbjct: 8842 atggtacttcaccagcctctgtcttagaatggacaat-tcgatcatcgacgtt-ttctag 8785

                                        
Query: 595  tcctttataggaagcagatctcttggac 622
            ||||| || |||||||| ||||||||||
Sbjct: 8784 tccttcatcggaagcagttctcttggac 8757


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8826
Number of Sequences: 1807
Number of extensions: 8826
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)