BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC07RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1150 0.0
>3x_Contig1629
Length = 12481
Score = 1150 bits (580), Expect = 0.0
Identities = 632/648 (97%), Gaps = 1/648 (0%)
Strand = Plus / Minus
Query: 74 gcttgcattgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3580 gcttgcattgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagct 3521
Query: 134 gaaaagagtcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgtt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3520 gaaaagagtcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgtt 3461
Query: 194 gacgaaaacggtgtggctagattcgacaagaaaagagttatgggtttcttgatacttatg 253
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 3460 gacgaaaacggtgtggctagattcgacaagaaaagagttatgggtttcttgagacagatg 3401
Query: 254 aaatcgaaaaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttact 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 aaatcgaaaaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttact 3341
Query: 314 atcccttcgtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 atcccttcgtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacg 3281
Query: 374 ccgaaatgctctcaattgatgcaatttagaactggtttcactccgaattttaacattgac 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 ccgaaatgctctcaattgatgcaatttagaactggtttcactccgaattttaacattgac 3221
Query: 434 gagttacttgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcct 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 gagttacttgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcct 3161
Query: 494 aaccaatacgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcaggag 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 aaccaatacgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcaggag 3101
Query: 554 acagatattatgaatcctcctcatagccaagaagtgttataattattatcatttttaaat 613
||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 3100 acagatattatgaatcctcctcatagccaagaagtgtcagatatattatcatttctaaat 3041
Query: 614 tcttcaaaacgaggaacccatttgagtaccccaccatctcatttggtcaatttcagctca 673
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 tctccaaaacgaggaaccaatttgagtaccccaccatctcatttggtcaatttcagctca 2981
Query: 674 ccaagagccaatagcataaacattcgcattccatttgaacattgtaaa 721
|||||||| ||||||| ||||||||||| | ||||||||| ||||||
Sbjct: 2980 ccaagagcgaatagca-gaacattcgcatccaatttgaacaatgtaaa 2934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7808
Number of Sequences: 1807
Number of extensions: 7808
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)