BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC08FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig887 680 0.0
>3x_Contig887
Length = 3466
Score = 680 bits (343), Expect = 0.0
Identities = 385/399 (96%)
Strand = Plus / Minus
Query: 107 ctcaagctcgcagtgaatataataagactgtaaagagattcgtcactttcatcaagaaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ctcaagctcgcagtgaatataataagactgtaaagagattcgtcactttcatcaagaaat 2133
Query: 167 ttgacaaaagaatgaaagaaggagcgagaaagcaagaagaagaaaagaagttaagactcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ttgacaaaagaatgaaagaaggagcgagaaagcaagaagaagaaaagaagttaagactcc 2073
Query: 227 aaaatgtcttgttaagccaaataagcaaggacaaagacgtagaaatgtcaaaaaaacagg 286
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 aaaatgccttgaaaagccaaataagcaaggacaaagacgtagaaatgtcaaaaaaacagg 2013
Query: 287 cagattttgctttgcaagactggcaaactattgatcacaaccgattacaggagattgacg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 cagattttgctttgcaagactggcaaactattgatcacaaccgattacaggagattgacg 1953
Query: 347 aatattacctatccaaagatcaaaagaaagcgccaacggatggcgagcatcatatcaata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 aatattacctatccaaagatcaaaagaaagcgccaacggatggcgagcatcatatcaata 1893
Query: 407 atgaccttgaggatgttctaatctatgaatgttttatctgtaacaaaaaaaccaaccccc 466
|||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 1892 atgaccttgaggatgttctaatctatgaatgttttatctgtaacaagaattttaagtccg 1833
Query: 467 aaaaacaactagataatcatcccaatacaaaactgcaca 505
| ||||||||||| |||||| ||||||||||||||||||
Sbjct: 1832 agaaacaactagagaatcataccaatacaaaactgcaca 1794
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,536
Number of Sequences: 1807
Number of extensions: 10536
Number of successful extensions: 160
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)