BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC08RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 1181 0.0
3x_Contig1092 916 0.0
3x_Contig1805 311 1e-84
3x_Contig1773 131 3e-30
3x_Contig1213 129 1e-29
3x_Contig1803 111 2e-24
3x_Contig1701 105 2e-22
3x_Contig1670 105 2e-22
3x_Contig1806 103 6e-22
>3x_Contig178
Length = 1315
Score = 1181 bits (596), Expect = 0.0
Identities = 700/728 (96%), Gaps = 5/728 (0%)
Strand = Plus / Minus
Query: 49 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 109 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 169 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 229 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 289 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 349 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 409 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 469 tctattg-aacagagataagcagag-acgtaacgagaaaattaatcttcaatgcgactta 526
||||||| |||| | ||||||| || || |||| | |||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 527 gtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcca 317
Query: 587 gttattgaaccaatg-ctaaatacgaagctgagctgagaggaactaggatcagcatcaag 645
||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 316 gttattgaaccaatgcctaaatacgcagctgagctgagaggcactaggatcagcatcaag 257
Query: 646 gctacagcacccagtatttgaacatcagatgttacaagtatattagtag-aagttccttc 704
||||||||||||||||||||||||||||||| |||||||||| | ||| ||| | | ||
Sbjct: 256 gctacagcacccagtatttgaacatcagatgcaacaagtatataactagcaagcttcatc 197
Query: 705 attcaaggagaacaccgtaagtaattttcctaattacttcggaagttcgtatactggccc 764
|| |||||||||||||||||||||||||||||| ||| ||||||||| |||||| | |
Sbjct: 196 atccaaggagaacaccgtaagtaattttcctaactac-acggaagttcttatacttgtca 138
Query: 765 ccaataca 772
||||||||
Sbjct: 137 ccaataca 130
>3x_Contig1092
Length = 2520
Score = 916 bits (462), Expect = 0.0
Identities = 486/494 (98%)
Strand = Plus / Plus
Query: 49 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 108
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 109 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 168
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 169 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 229 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 288
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 289 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 348
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 349 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 409 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 469 tctattgaacagagataagcagagacgtaacgagaaaattaatcttcaatgcgacttagt 528
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 529 caaaactgtatcag 542
||||||||||||||
Sbjct: 714 caaaactgtatcag 727
>3x_Contig1805
Length = 19369
Score = 311 bits (157), Expect = 1e-84
Identities = 203/217 (93%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 573 tttctaatgcgccagttattgaaccaatgctaaatacgaagctgagctgagaggaactag 632
||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 16947 tttctaaggcgtcatttagtgaaccaatgctaaataagaagttgagctgagagcaactag 16888
Query: 633 gatcagcatcaaggctacagcacccagtatttgaacatcagatgttacaagtatattagt 692
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 16887 gatcagcatcaaggctacagcacccagtatttgaacatcagatgtaacaagtatataagt 16828
Query: 693 agaagttccttcattcaaggagaacaccgtaagtaattttcctaattacttcggaagttc 752
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16827 agaagttccttcatccaaggagaacaccgtaagtaattttcctaattac-tcggaagttc 16769
Query: 753 gtatactggcccccaatacatatttattaatttttat 789
||||||||||| ||||||||||| |||||||| ||||
Sbjct: 16768 gtatactggccaccaatacatatctattaattattat 16732
Score = 103 bits (52), Expect = 6e-22
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 547 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 606
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 178 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaga 119
Query: 607 tacgaagctg-agctgagaggaactaggatca 637
|| ||| ||| |||||||| ||||||||||||
Sbjct: 118 taagaatctgaagctgagacgaactaggatca 87
>3x_Contig1773
Length = 8694
Score = 131 bits (66), Expect = 3e-30
Identities = 91/98 (92%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 8525 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 8583
Query: 660 tatttgaacatcagatgttacaagtatattagtagaag 697
|||||||||||||||||| |||||||||| ||| ||||
Sbjct: 8584 tatttgaacatcagatgtaacaagtatataagttgaag 8621
>3x_Contig1213
Length = 3226
Score = 129 bits (65), Expect = 1e-29
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 173 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 115
Query: 660 tatttgaacatcagatgttacaagtatat 688
|||||||||||||||||| ||||||||||
Sbjct: 114 tatttgaacatcagatgtaacaagtatat 86
>3x_Contig1803
Length = 52241
Score = 111 bits (56), Expect = 2e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 547 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 606
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 51606 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaaa 51547
Query: 607 tacgaagctg-agctgagaggaactaggatca 637
|| ||||||| ||||| || ||||||||||||
Sbjct: 51546 taagaagctgaagctgggatgaactaggatca 51515
>3x_Contig1701
Length = 10926
Score = 105 bits (53), Expect = 2e-22
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 546 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 605
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 5382 ctgttgttacctggcgttgtaggagcagttctaaggcgccagttattgaaacaatgctaa 5323
Query: 606 atacgaagctg-agctgagaggaactaggatca 637
||| ||||||| |||||||| ||||||||||||
Sbjct: 5322 ataagaagctgaagctgagacgaactaggatca 5290
>3x_Contig1670
Length = 9382
Score = 105 bits (53), Expect = 2e-22
Identities = 88/98 (89%), Gaps = 5/98 (5%)
Strand = Plus / Minus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 152 tgctaaataagaagctgagctgagaggaactag----agcatcaaggctacagca-ccat 98
Query: 660 tatttgaacatcagatgttacaagtatattagtagaag 697
|||||||||||||||||| |||||| ||| ||||||||
Sbjct: 97 tatttgaacatcagatgtaacaagtctataagtagaag 60
>3x_Contig1806
Length = 53694
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 546 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 605
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 41705 ctgttgttctctggcgttgtaggagcatttctaaggcgccagttattgaaccaatgctag 41646
Query: 606 atacgaag 613
||| ||||
Sbjct: 41645 ataagaag 41638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6244
Number of Sequences: 1807
Number of extensions: 6244
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 9
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)