BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC09RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1072 0.0
>3x_Contig1612
Length = 15608
Score = 1072 bits (541), Expect = 0.0
Identities = 628/649 (96%), Gaps = 6/649 (0%)
Strand = Plus / Minus
Query: 46 ttcaactttaacgaaattagaaaagagatcgttttggagaccgataagagtaccgggaag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 ttcaactttaacgaaattagaaaagagatcgttttggagaccgataagagtaccgggaag 2143
Query: 106 aatgcagggatttctgcggttccaatcactttaagagtatattcgccacatgtgctaact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 aatgcagggatttctgcggttccaatcactttaagagtatattcgccacatgtgctaact 2083
Query: 166 ttaaccttggtcgatttgcccggtttgaccaaggtccctgttggtgatcaaccagctgat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 ttaaccttggtcgatttgcccggtttgaccaaggtccctgttggtgatcaaccagctgat 2023
Query: 226 atcgaaagacaaatcaaggatatgatcttgacttacatcaagaaacctaacgctattatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 atcgaaagacaaatcaaggatatgatcttgacttacatcaagaaacctaacgctattatc 1963
Query: 286 ttggcagtgaacccagctaatgctgatttggctaacagtgatggtttgaaattggccagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962 ttggcagtgaacccagctaatgctgatttggctaacagtgatggtttgaaattggccagg 1903
Query: 346 gaagtcgatcccgatggatcaagaaccatcggtgtgttaactaaagtcgatttgatggat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 gaagtcgatcccgatggatcaagaaccatcggtgtgttaactaaagtcgatttgatggat 1843
Query: 406 gaaggtacagatgtcatcgatattttggccggaagagttatcccattgaaatttggttat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 gaaggtacagatgtcatcgatattttggccggaagagttatcccattgaaatttggttat 1783
Query: 466 atcccagtaatcaatagaggtcaaaaagatttcgaaaag-ataaaacaattagatctgcg 524
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1782 atcccagtaatcaatagaggtcaaaaagatatcgaaaagaataaaacaattagatctgcg 1723
Query: 525 tttgaggacgaaaaacgtttcttttgag-accattcatcgtacagtgcaagagcactgta 583
|| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct: 1722 ttagaggacgaaaaacgtttc-tttgagaaccatccatcgtacagtgcaagagcactgta 1664
Query: 584 ctgtggtaccccatattttaactaagaaatttaattcttatttttttgcataccattaga 643
||||||||||||||| |||||||||||| || ||||| |||| | |||||| ||| ||
Sbjct: 1663 ctgtggtaccccata-tttaactaagaagttaaattc-tattctattgcatcacatcag- 1607
Query: 644 acaaccgttgccggattttaaacataagattgaagttactttgaagaaa 692
|||| ||||||| ||| |||||||||||||||| || ||||||||||||
Sbjct: 1606 acaaacgttgccagatattaaacataagattgaggtcactttgaagaaa 1558
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7011
Number of Sequences: 1807
Number of extensions: 7011
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)