BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC10FM1.SCF screened BAC_end
(1181 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 583 e-166
>3x_Contig1769
Length = 25795
Score = 583 bits (294), Expect = e-166
Identities = 327/338 (96%)
Strand = Plus / Plus
Query: 126 tttgtatgtgagcatatcaagaaacattatctgatctccgacgcgcacatatacacatgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8682 tttgtatgtgagcatatcaagaaacattatctgatctccgacgcgcacatatacacatgt 8741
Query: 186 ggtgtatgataaccgactataatcctataaatcctttatcctttcttccctgttatgatc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8742 ggtgtatgataaccgactataatcctataaatcctttatcctttcttccctgttatgatc 8801
Query: 246 tcctgatagatcttaaatgctctctgtccggcggctactagcaatcttaaacgggactga 305
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8802 tcctgatagaacttaaatgctctctgtccggtggctactagcaatcttaaacgggactga 8861
Query: 306 agattaaataggcatattacccggaaaactctattagggtaaaatttagtaggttttcat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8862 agattaaataggcatattacccggaaaactctattagggtaaaatttagtaggttttcat 8921
Query: 366 cgattgcctcatatttcaagaaagcgggactttcgttccaataagccatactggctatat 425
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 8922 cgattgcctcatatttcaagaaagtgggacttttgttccaataagtcatactggctatat 8981
Query: 426 atatataccgccgcactatatcgcaaattcttcattgg 463
|||||||| | |||||||| | ||||||||||||||
Sbjct: 8982 atatatacgtcttcactatattgtaaattcttcattgg 9019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,848
Number of Sequences: 1807
Number of extensions: 15848
Number of successful extensions: 166
Number of sequences better than 1.0e-20: 1
length of query: 1181
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1165
effective length of database: 10,329,639
effective search space: 12034029435
effective search space used: 12034029435
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)