BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC10RM1.SCF screened BAC_end
(1165 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 735 0.0
>3x_Contig1166
Length = 5040
Score = 735 bits (371), Expect = 0.0
Identities = 402/411 (97%), Gaps = 1/411 (0%)
Strand = Plus / Minus
Query: 83 cttcaactgttcttctaatcaa-tgttctctcgattgaacaagacattgaatggaaacat 141
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4374 cttcaactgttcttctaatcaaatgttctctcgattgaacaagacattgaatggaaacat 4315
Query: 142 cttctggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 cttctggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatg 4255
Query: 202 ggaatgagacctcaatttctttgaaaccaatctcaatcaacttatggaaatattccttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 ggaatgagacctcaatttctttgaaaccaatctcaatcaacttatggaaatattccttct 4195
Query: 262 tctgctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tctgctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaa 4135
Query: 322 gccacctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatct 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 gccacctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatct 4075
Query: 382 gtgggtatgggctatatttcgtcgatggatcttttaacatattcttgtactctagtttca 441
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 4074 gtgggtatggtctatatttcgtcgatggatcttttagcatattcttgtacgctagtttca 4015
Query: 442 ctggaggaatagcttttttcccaacctgttctaaacgcccaaacgtgttcc 492
||||||||||||||||||||||| ||||| |||||||| ||| |||||||
Sbjct: 4014 ctggaggaatagcttttttcccagcctgtgctaaacgcacaacggtgttcc 3964
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,513
Number of Sequences: 1807
Number of extensions: 28513
Number of successful extensions: 2304
Number of sequences better than 1.0e-20: 1
length of query: 1165
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1149
effective length of database: 10,329,639
effective search space: 11868755211
effective search space used: 11868755211
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)