BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZC11FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 793 0.0
>3x_Contig1610
Length = 13981
Score = 793 bits (400), Expect = 0.0
Identities = 430/436 (98%), Gaps = 3/436 (0%)
Strand = Plus / Plus
Query: 93 caaacaggtcagacaatgaatataatgctagagcatctgtattttctgctttgactactt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 caaacaggtcagacaatgaatataatgctagagcatctgtattttctgctttgactactt 5262
Query: 153 tagtagagttcgctaatgaccaagtcggggaaactactacctcaatttccacttttgttt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 tagtagagttcgctaatgaccaagtcggggaaactactacctcaatttccacttttgttt 5322
Query: 213 tggataaacttttactaaacaatgcaagtggatgaagctcaattaacagctgaagataga 272
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 tggataaacttggac-aaacaatgcaagtggatgaagctcaattaacagctgaagataga 5381
Query: 273 caaaacttacatgaattacaatcgaacattttatctgttttggctgcagtgattagaaag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 caaaacttacatgaattacaatcgaacattttatctgttttggctgcagtgattagaaag 5441
Query: 333 aacccacaatctgttaatccagtagcagatatgttgatggatctatttatgaaacttttg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 aacccacaatctgttaatccagtagcagatatgttgatggatctatttatgaaacttttg 5501
Query: 393 agcaagaatgatacaacatacgtggaagatgatgtcttttacgctatttctgctctagca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 agcaagaatgatacaacatacgtggaagatgatgtcttttacgctatttctgctctagca 5561
Query: 453 tctgcgttgggtaaaaactttgaaaagtatttggaaagcttctccccatattttggttaa 512
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 5562 tctgcgttgggtaaaaactttgaaaagtatttggaaagtttctccccata-tttggttaa 5620
Query: 513 tgccgttaaatcaagt 528
|| |||||||||||||
Sbjct: 5621 tg-cgttaaatcaagt 5635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,576
Number of Sequences: 1807
Number of extensions: 17576
Number of successful extensions: 1619
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)