BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZC11RM1.SCF screened BAC_end
         (923 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1024                                                        1189   0.0  

>3x_Contig1024 
          Length = 3867

 Score = 1189 bits (600), Expect = 0.0
 Identities = 631/640 (98%), Gaps = 1/640 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   cagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacct 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 cagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacct 2357

                                                                        
Query: 110  tggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgga 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 tggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgga 2297

                                                                        
Query: 170  ttgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattct 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2296 ttgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattct 2237

                                                                        
Query: 230  tcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 tcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataaa 2177

                                                                        
Query: 290  cttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaag 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2176 cttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaag 2117

                                                                        
Query: 350  cgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 cgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaag 2057

                                                                        
Query: 410  tccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaactt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 tccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaactt 1997

                                                                        
Query: 470  tgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggct 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 tgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggct 1937

                                                                        
Query: 530  ttcctgggtgccctagaaggtttcgtcaattggactgtgcagagttgtaaattatccaaa 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 ttcctgggtgccctagaaggtttcgtcaattggactgtgcagagttgtaaattatccaaa 1877

                                                                        
Query: 590  aaccctttaacaagacaacccttttctttgaaatgaagttgtagattacttcattagcta 649
            ||||||| ||||||||||||||||||| ||||||||||| |||||| ||| ||| |||||
Sbjct: 1876 aacccttcaacaagacaacccttttctctgaaatgaagtagtagatgactccataagcta 1817

                                                    
Query: 650  ttgggagatattgccctttgggttacccaatattattaga 689
            ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 1816 ttgcgagatagtgccc-ttgggttacccaatattattaga 1778


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8045
Number of Sequences: 1807
Number of extensions: 8045
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)