BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZC12RM1.SCF screened BAC_end
         (1001 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig637                                                         1019   0.0  

>3x_Contig637 
          Length = 2206

 Score = 1019 bits (514), Expect = 0.0
 Identities = 524/526 (99%), Gaps = 1/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 75  cttcaacaaatcc-ttttcccattctggaaagctcgtcgactgaattctcccggcatcgc 133
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttcaacaaatccattttcccattctggaaagctcgtcgactgaattctcccggcatcgc 481

                                                                       
Query: 134 catacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgcctttat 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgcctttat 421

                                                                       
Query: 194 aatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtccgtgg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtccgtgg 361

                                                                       
Query: 254 ttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatataa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatataa 301

                                                                       
Query: 314 tgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaagat 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaagat 241

                                                                       
Query: 374 atactttgaatgtgtacccgatatcctaattatagctattgcagagtgctgatttgatgg 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atactttgaatgtgtacccgatatcctaattatagctattgcagagtgctgatttgatgg 181

                                                                       
Query: 434 cgttgataatgcatacactgtaggatggaaaaatgtcgctggaacactataaaaccgtcg 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cgttgataatgcatacactgtaggatggaaaaatgtcgctggaacactataaaaccgtcg 121

                                                                       
Query: 494 caacattgggctgaacatcactttttgcgaaaaattgaaccaaatgagagtgggatcctt 553
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 caacattgggctgaacatcactttttgcgaaaaattgaacctaatgagagtgggatcctt 61

                                                         
Query: 554 gtagactaccattacgattccaactgcaatttatggtagtttagaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtagactaccattacgattccaactgcaatttatggtagtttagaa 15


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6049
Number of Sequences: 1807
Number of extensions: 6049
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)