BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD01FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1374 0.0
>3x_Contig1507
Length = 11359
Score = 1374 bits (693), Expect = 0.0
Identities = 754/769 (98%), Gaps = 4/769 (0%)
Strand = Plus / Plus
Query: 88 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 7620
Query: 148 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 7680
Query: 208 agtaccatgatgataataagcgaagactaaagaaacagttgccgatcgttccatcgccca 267
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 agtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgccca 7740
Query: 268 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7741 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 7800
Query: 328 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7801 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 7860
Query: 388 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7861 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 7920
Query: 448 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 7980
Query: 508 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7981 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 8040
Query: 568 aattctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 627
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8041 atttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 8100
Query: 628 tagatgatgagtaccatgatgacgacggtaatgtatcaattt-aacacaacacaaggatt 686
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8101 tagatgatgagtaccatgatgacgacggtaatgtatcaatttcaacacaacacaaggatt 8160
Query: 687 cacaattagataaaatcttacagaacacgtttggacaattctgaggaggatactttacag 746
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8161 cacaattagataaaatcttacagaacacg-ttggacaattctgaggaggatactttacag 8219
Query: 747 ataagctcttactttcaactcatccgataacctaccatttagcctaaggcaaaattccga 806
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 8220 ataagctc-tactttcaactcatccgataacctaccatctagcctaaggcaaaattcgga 8278
Query: 807 tttcagtgtaatgattaacttggcccgatttggaacaacatttgaatga 855
|| ||||||||||| ||||| || |||||||||| ||||| ||||||||
Sbjct: 8279 ttccagtgtaatga-taactcgggccgatttggagcaacaattgaatga 8326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5939
Number of Sequences: 1807
Number of extensions: 5939
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)