BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD01RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1362 0.0
>3x_Contig1509
Length = 8584
Score = 1362 bits (687), Expect = 0.0
Identities = 712/719 (99%), Gaps = 1/719 (0%)
Strand = Plus / Minus
Query: 47 taaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttcgac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7054 taaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttcgac 6995
Query: 107 tgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaataga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6994 tgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaataga 6935
Query: 167 ccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttccttttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6934 ccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttccttttct 6875
Query: 227 tcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccaccagct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874 tcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccaccagct 6815
Query: 287 gggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttaccttcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6814 gggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttaccttcc 6755
Query: 347 aaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttcaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6754 aaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttcaaga 6695
Query: 407 acgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaagtaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6694 acgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaagtaa 6635
Query: 467 gctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaagaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634 gctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaagaa 6575
Query: 527 gcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaaaga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6574 gcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaaaga 6515
Query: 587 acaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttgtatt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514 acaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttgtatt 6455
Query: 647 aagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatccaag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6454 aagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatccaag 6395
Query: 707 aaacttttgcattatcgtggaaaaattcagactattccttggaatcatgtaccaccact 765
|||| ||||||| |||||| |||| |||||||||||| ||| |||||||||| ||||||
Sbjct: 6394 aaac-tttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgaccact 6337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,655
Number of Sequences: 1807
Number of extensions: 11655
Number of successful extensions: 300
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)