BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD02FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1035 0.0
>3x_Contig1509
Length = 8584
Score = 1035 bits (522), Expect = 0.0
Identities = 538/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Plus
Query: 87 ttcgattaaattaagaatgtaaggaaagggggtgattaaacaatgtgataggatatgtca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttcgattaaattaagaatgtaaggaaagggggtgattaaacaatgtgataggatatgtca 8102
Query: 147 tgttcatgagatcgtgataactatagataatttggggttgataaaaatttataaactaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 tgttcatgagatcgtgataactatagataatttggggttgataaaaatttataaactaac 8162
Query: 207 aaatcggggatatttaaagataagggtgagatggctggtagtggtcagccagctgaagaa 266
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 aaatcggggacaatgaaagataagggtgagatggctggtagtggtcagccagctgaagaa 8222
Query: 267 a-acctggtaaccaccaaagttattcttgttgttcaccaccatttttttttttatctcat 325
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 atacctggtaaccaccaaagttattcttgttgttcaccaccatttttttttttatctcat 8282
Query: 326 taggaaagcagaattgaagtatgtgtgtttttgtgcatttaccatgcgcgccgagatgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 taggaaagcagaattgaagtatgtgtgtttttgtgcatttaccatgcgcgccgagatgtt 8342
Query: 386 cgatcaaaaatttaattaagtcgtgagtggacaaaagggttttggagttgaaatgcgtaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 cgatcaaaaatttaattaagtcgtgagtggacaaaagggttttggagttgaaatgcgtaa 8402
Query: 446 gttttatactgttggtgcatttggcatgaaataagccttgacagggaagtaactgtttgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 gttttatactgttggtgcatttggcatgaaataagccttgacagggaagtaactgtttgt 8462
Query: 506 atcatcagcgataccactgtacaaggaataccagccacatacagaggaaaggataccgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 atcatcagcgataccactgtacaaggaataccagccacatacagaggaaaggataccgaa 8522
Query: 566 ataaccaccagcaatagaaaccttctcgttaccggtgaatgaacctatcgttaacattag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8523 ataaccaccagcaatagaaaccttctcgttaccggtgaatgaacctatcgttaacattag 8582
Query: 626 ga 627
||
Sbjct: 8583 ga 8584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,345
Number of Sequences: 1807
Number of extensions: 11345
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)