BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD02RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1572 0.0
>3x_Contig1423
Length = 8454
Score = 1572 bits (793), Expect = 0.0
Identities = 837/845 (99%), Gaps = 5/845 (0%)
Strand = Plus / Plus
Query: 46 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 5570
Query: 106 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 5630
Query: 166 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 5690
Query: 226 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 5750
Query: 286 atcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgactgtcc 344
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5751 atcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgactgtcc 5810
Query: 345 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 5870
Query: 405 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 5930
Query: 465 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 5990
Query: 525 ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 6050
Query: 585 tttttttttttttaataattaatagatataacactataataataattcaaataaaacagt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 tttttttttttttaataattaatagatataacactataataataattcaaataaaacagt 6110
Query: 645 taaggatatcaccattaaatagagcggagtagattggaatgttaactcatcatcatagca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 taaggatatcaccattaaatagagcggagtagattggaatgttaactcatcatcatagca 6170
Query: 705 tcgccatctacttcttgtccagcatgaactgactgtacgttagattctggtacagcaaat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 tcgccatctacttcttgtccagcatgaactgactgtacgttagattctggtacagcaaat 6230
Query: 765 ggtctctcgttactcgaggaattttcactttcaatcagctgccggattgaaccaaatacc 824
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 6231 ggtctctcgttactcgaggaatttccacttccaatcagctg-cggattgaaccaaatacc 6289
Query: 825 gttggtgtttttctgtattcaggcttttttggctttttaggcaataccctttcttggagg 884
||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 6290 gttggtg-ttttctgta-tcaggcttttttggcttttcaggcaataccctttc-tggagg 6346
Query: 885 atgct 889
|||||
Sbjct: 6347 atgct 6351
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,741
Number of Sequences: 1807
Number of extensions: 16741
Number of successful extensions: 194
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)