BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD03FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1049 0.0
3x_Contig178 779 0.0
>3x_Contig1092
Length = 2520
Score = 1049 bits (529), Expect = 0.0
Identities = 606/629 (96%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 77 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 137 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 197 ctcagggagctattcttcactcggatgtctgctaccccagctgcggccacagcgtatggc 256
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 257 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 317 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 377 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 437 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 497 tctattgaacagagataagcagacgcgtaacgagtaaattaatcttcaatgggacttagt 556
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 557 taaaacttgtataatttgtagattgagagtgaattgaatatgggtccgggatctaatgat 616
||||| ||||| | |||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 714 caaaac-tgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgag 772
Query: 617 tcacgtgatactacttgtacaaaggccccctatccacaacttaattcacaattttcttta 676
||||||||||||||||| ||||||||| |||| |||||||| | |||||||| |||| ||
Sbjct: 773 tcacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctata 832
Query: 677 aggattccattggttggcattgatgttcc 705
||||| | ||||||| | |||||||||||
Sbjct: 833 aggatccaattggtt-gtattgatgttcc 860
>3x_Contig178
Length = 1315
Score = 779 bits (393), Expect = 0.0
Identities = 467/489 (95%), Gaps = 2/489 (0%)
Strand = Plus / Minus
Query: 77 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 136
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 137 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 196
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 197 ctcagggagctattcttcactcggatgtctgctaccccagctgcggccacagcgtatggc 256
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 257 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 316
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 317 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 376
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 377 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 436
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 437 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 497 tctattg-aacagagataagcaga-cgcgtaacgagtaaattaatcttcaatgggactta 554
||||||| |||| | ||||||| | | | |||| | |||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 555 gttaaaact 563
|| ||||||
Sbjct: 376 gtcaaaact 368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7876
Number of Sequences: 1807
Number of extensions: 7876
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)