BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD03RM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig605 702 0.0
>3x_Contig605
Length = 2275
Score = 702 bits (354), Expect = 0.0
Identities = 372/378 (98%)
Strand = Plus / Plus
Query: 77 gcttggagcaactgggagtcttcagtattgactttcgtctataagtattaaaatggcaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 gcttggagcaactgggagtcttcagtattgactttcgtctataagtattaaaatggcaaa 1957
Query: 137 aaaaatatctccgctatagattcgacgaagcaaaatatcagcaaacacaaagatatagat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 aaaaatatctccgctatagattcgacgaagcaaaatatcagcaaacacaaagatatagat 2017
Query: 197 ccaaatgaacaaacaatagtactcccaaagattgtaagcgatggtgttaggtgaggattt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 ccaaatgaacaaacaatagtactcccaaagattgtaagcgatggtgttaggtgaggattt 2077
Query: 257 caaatgcctaccaaactaggttagaatccctaatggaaatggtaccttatgatgtcttaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 caaatgcctaccaaactaggttagaatccctaatggaaatggtaccttatgatgtcttaa 2137
Query: 317 caatcttgagctccttaaagaagtaaaaggttccttcatggcgaaatgataaatgttcaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 caatcttgagctccttaaagaagtaaaaggttccttcatggcgaaatgataaatgttcaa 2197
Query: 377 atcggtggcgggccctaacaagacttgtggcttgacagctttaccatgtaccgtgaggag 436
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 2198 atcggtggcgggccctaacaagacttgtggcttgacagctttaccttgtttcgtgaggag 2257
Query: 437 catcgtcataaatgggac 454
|||| || | ||||||||
Sbjct: 2258 catcttctttaatgggac 2275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8733
Number of Sequences: 1807
Number of extensions: 8733
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)