BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZD04FM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1245 1059 0.0 >3x_Contig1245 Length = 6017 Score = 1059 bits (534), Expect = 0.0 Identities = 625/646 (96%), Gaps = 7/646 (1%) Strand = Plus / Minus Query: 87 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4455 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 4396 Query: 147 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4395 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 4336 Query: 207 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4335 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 4276 Query: 267 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4275 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 4216 Query: 327 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4215 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 4156 Query: 387 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 4096 Query: 447 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 4036 Query: 507 atgtatgtatcgagtgatggtcgtgagttcgatattaag-atttcctttccatctcatat 565 ||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| Sbjct: 4035 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 3976 Query: 566 tcacgatttgatggggatatgacagttgagcaagcgtatgaaatc-tggtagaaaataat 624 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 3975 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagaaaataag 3916 Query: 625 attttggtttct-gagactatatccccatcgtaattgatggagggggggtttcctttttt 683 ||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct: 3915 tatttggttcctagagactatatccccatcgtaattgatgga-ggggggtttcc-tttct 3858 Query: 684 gtttga-aaaaagcagtgaagaacgtttctcttgctaatatagaat 728 |||||| |||| ||||||||| |||||| ||||||||||||||| Sbjct: 3857 gtttgagaaaaggcagtgaag-acgttttctttgctaatatagaat 3813 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7187 Number of Sequences: 1807 Number of extensions: 7187 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)