BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZD04RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig816                                                         1366   0.0  

>3x_Contig816 
          Length = 2278

 Score = 1366 bits (689), Expect = 0.0
 Identities = 715/721 (99%), Gaps = 2/721 (0%)
 Strand = Plus / Plus

                                                                        
Query: 58   ttctggtccaaagggtctccccacaagaccaaggtgaattgactggtatcttggctgaac 117
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ttctggtccaaagg-tctccccacaagaccaaggtgaattgactggtatcttggctgaac 1106

                                                                        
Query: 118  taggttactccaagagtaacgtcttcaagttctgagaagagtgacccttagacttctttt 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 taggttactccaagagtaacgtcttcaagttctgagaagagtgacccttagacttctttt 1166

                                                                        
Query: 178  acccttctaagcacttttttctgaatcttcaacataaatatattcaattactctttaaaa 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 acccttctaagcacttttttctgaatcttcaacataaatatattcaattactctttaaaa 1226

                                                                        
Query: 238  ccaatgacgacttgttaagcaacaattaaccagaagaaaaaataaacaaaacacattttc 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ccaatgacgacttgttaagcaacaattaaccagaagaaaaaataaacaaaacacattttc 1286

                                                                        
Query: 298  aaataggggtccattgttgtgaatctgggaaagtagcggttgatcgattcaactgcagtc 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 aaataggggtccattgttgtgaatctgggaaagtagcggttgatcgattcaactgcagtc 1346

                                                                        
Query: 358  ttttccttatttttcctcctgacaaaactttggataaaggcctttcgacagctaagccca 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 ttttccttatttttcctcctgacaaaactttggataaaggcctttcgacagctaagccca 1406

                                                                        
Query: 418  aattatcatgattttatttacacattatctaaaacaattctttattacacaagtataaca 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 aattatcatgattttatttacacattatctaaaacaattctttattacacaagtataaca 1466

                                                                        
Query: 478  acatagtttcttatttttcggcaaatggtgataaacatttgatctggtgtttgacatacg 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 acatagtttcttatttttcggcaaatggtgataaacatttgatctggtgtttgacatacg 1526

                                                                        
Query: 538  ggacgtcacctctttactgtagaaacttttctgttacatattccgtttgttttatgacag 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 ggacgtcacctctttactgtagaaacttttctgttacatattccgtttgttttatgacag 1586

                                                                        
Query: 598  atctataactttgtggtacgggtattctgtatttcgaccaatcttctacatgtccgactt 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 atctataactttgtggtacgggtattctgtatttcgaccaatcttctacatgtccgactt 1646

                                                                        
Query: 658  caacgttactttgcaattcgtctacaggaatttgttgcaaattcttgcctttcaatgagt 717
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1647 caacgttactttgcaattcgtctacaggaatttgttgcaaatccttgcctttcaatgagt 1706

                                                                        
Query: 718  cttttatggaaaagacaagatttcaaatttgctagatattcaggatccccatacaatgcc 777
            ||||||||| |||||||  |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1707 cttttatgg-aaagacagtatttcaaatttgctagatattcaggatcccaatacaatgcc 1765

             
Query: 778  c 778
            |
Sbjct: 1766 c 1766


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7589
Number of Sequences: 1807
Number of extensions: 7589
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)