BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1225 0.0
>3x_Contig1468
Length = 9852
Score = 1225 bits (618), Expect = 0.0
Identities = 677/692 (97%), Gaps = 6/692 (0%)
Strand = Plus / Minus
Query: 91 tgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtagt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 tgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtagt 1550
Query: 151 cattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgttc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 cattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgttc 1490
Query: 211 aggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgaccc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 aggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgaccc 1430
Query: 271 gccaaatagcgaagagctacttcctgctgctcctacggagccaaagccaccaaatgttgg 330
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 1429 gccaaatagcgaagagctacttcctgc--cttctacggagccaaagccaccaaatgttgg 1372
Query: 331 ttttgctgcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcatc 390
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 ttttg--gcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcatc 1314
Query: 391 gtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtatt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 gtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtatt 1254
Query: 451 agaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtgt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 agaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtgt 1194
Query: 511 attcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtggtcgc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 attcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtggtcgc 1134
Query: 571 tccaaacgctgaaaatgcatttcccctgctgcgtattagagctaccagcagctgaaccga 630
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1133 tccaaacgctgaaaatgcattt-ccctgctgcgtattagagctaccagcagctgaaccga 1075
Query: 631 aacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaagcac 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 aacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaagcac 1015
Query: 691 ctgtgctggtactggtgttttctgtggtagatacattttgtcctgattccataccgggca 750
|||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |
Sbjct: 1014 ctgtgctggtactggtgtttcctgtggtagatacattttgtcctgatccagtaccggcaa 955
Query: 751 acaaattggaaattgttgtttccaccggaagc 782
||||||||| ||||| |||| |||||||||||
Sbjct: 954 acaaattgg-aattgctgttcccaccggaagc 924
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6248
Number of Sequences: 1807
Number of extensions: 6248
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)