BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD05RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 545 e-155
3x_Contig1582 484 e-136
>3x_Contig1744
Length = 24119
Score = 545 bits (275), Expect = e-155
Identities = 275/275 (100%)
Strand = Plus / Minus
Query: 47 tcactttccagtattcatagaaaacatcaatcaaattaactggaatctgtatataaatag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcactttccagtattcatagaaaacatcaatcaaattaactggaatctgtatataaatag 216
Query: 107 atgaacctgtttatattcaagactctgtccccaagcgattagtcttccttcctccagcca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atgaacctgtttatattcaagactctgtccccaagcgattagtcttccttcctccagcca 156
Query: 167 attgcttgctctgctttctcataaataccaagggaaacaatgggtgttgataagaagatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 attgcttgctctgctttctcataaataccaagggaaacaatgggtgttgataagaagatc 96
Query: 227 aagaagttcttaagagacgccatacgagtggctcctaagatttccaataaaggtgaattg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aagaagttcttaagagacgccatacgagtggctcctaagatttccaataaaggtgaattg 36
Query: 287 tttgaactacgaaatggattagtatctcagtaccc 321
|||||||||||||||||||||||||||||||||||
Sbjct: 35 tttgaactacgaaatggattagtatctcagtaccc 1
>3x_Contig1582
Length = 14087
Score = 484 bits (244), Expect = e-136
Identities = 280/288 (97%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 600 aatacattgagattccgctaagaaagactctagtcgatgataatccgtacgtgagaagaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14087 aatacattgagattccgctaagaaagactctagtcgatgataatccgtacgtgagaagaa 14028
Query: 660 ccgcggtactatgcgttgcaaaattgttccaattgaacccggacctatgccgtgaattgg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14027 ccgcggtactatgcgttgcaaaattgttccaattgaacccggacctatgccgtgaattgg 13968
Query: 720 gcgtattgaacgatttgcaagacgctttgtctgacgataatccaatggtttgtgccaacg 779
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13967 gcgtattgaacgatttgcaagacgctttgtctgacgataatccaatggttgttgccaacg 13908
Query: 780 cgcttgccgcactgcacgaaa-taacgaattggaccctggttcaatagatatcaaggaat 838
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 13907 cgcttgccgcactgcacgaaattaacgaattggaccctggttcaatagatatcaagaaat 13848
Query: 839 tagtatttcaaaccgttaagaggtttttgacacg-gttgaacgaatgt 885
|||||| ||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 13847 tagtatctcaaaacgttaagaggtttttga-acgtgttgaacgaatgt 13801
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6080
Number of Sequences: 1807
Number of extensions: 6080
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)