BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD06FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 545 e-155
3x_Contig1582 101 2e-21
>3x_Contig1744
Length = 24119
Score = 545 bits (275), Expect = e-155
Identities = 275/275 (100%)
Strand = Plus / Minus
Query: 72 tcactttccagtattcatagaaaacatcaatcaaattaactggaatctgtatataaatag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcactttccagtattcatagaaaacatcaatcaaattaactggaatctgtatataaatag 216
Query: 132 atgaacctgtttatattcaagactctgtccccaagcgattagtcttccttcctccagcca 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atgaacctgtttatattcaagactctgtccccaagcgattagtcttccttcctccagcca 156
Query: 192 attgcttgctctgctttctcataaataccaagggaaacaatgggtgttgataagaagatc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 attgcttgctctgctttctcataaataccaagggaaacaatgggtgttgataagaagatc 96
Query: 252 aagaagttcttaagagacgccatacgagtggctcctaagatttccaataaaggtgaattg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aagaagttcttaagagacgccatacgagtggctcctaagatttccaataaaggtgaattg 36
Query: 312 tttgaactacgaaatggattagtatctcagtaccc 346
|||||||||||||||||||||||||||||||||||
Sbjct: 35 tttgaactacgaaatggattagtatctcagtaccc 1
>3x_Contig1582
Length = 14087
Score = 101 bits (51), Expect = 2e-21
Identities = 103/119 (86%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 625 tacattgagatttcgttaa-aaagaccctagtcgatgataatccctacgtaaaaagaacc 683
|||||||||||| || ||| |||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 14085 tacattgagattccgctaagaaagactctagtcgatgataatccgtacgtgagaagaacc 14026
Query: 684 ccggtactatgcgttgccaaataggtcccattgaacccgtacccatgccccgaattggg 742
|||||||||||||||| |||| | ||| |||||||||| ||| ||||| ||||||||
Sbjct: 14025 gcggtactatgcgttgcaaaattgttccaattgaacccggacctatgccgtgaattggg 13967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6194
Number of Sequences: 1807
Number of extensions: 6194
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)