BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZD06RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1468                                                        1120   0.0  

>3x_Contig1468 
          Length = 9852

 Score = 1120 bits (565), Expect = 0.0
 Identities = 584/589 (99%), Gaps = 1/589 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   cttgagtttgtagccttattgaacgtttcgctaacttcgtttatttcggtaatcaacgag 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3081 cttgagtttgtagccttattgaacgtttcgctaacttcgtttatttcggtaatcaacgag 3022

                                                                        
Query: 105  gaaagatttagtgacaaagagtttaggttgtcgtcaagcatttccactgtatgataggct 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3021 gaaagatttagtgacaaagagtttaggttgtcgtcaagcatttccactgtatgataggct 2962

                                                                        
Query: 165  tgttgtctcttttgatcattcgttttgcttgtgttgttattgttgctcgaagaaagcacc 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2961 tgttgtctcttttgatcattcgttttgcttgtgttgttattgttgctcgaagaaagcacc 2902

                                                                        
Query: 225  tcagatagcagatcttcagccttttgttcataagaatcgaggaaatactcaagttcagat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2901 tcagatagcagatcttcagccttttgttcataagaatcgaggaaatactcaagttcagat 2842

                                                                        
Query: 285  tgttgtctttcgatatatgagagagactgatctactctattttgagattgttcagcagtt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2841 tgttgtctttcgatatatgagagagactgatctactctattttgagattgttcagcagtt 2782

                                                                        
Query: 345  aatgtatcagagtacaaccgacttatttgttcaccaccttgcattaatactttgtcccac 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2781 aatgtatcagagtacaaccgacttatttgttcaccaccttgcattaatactttgtcccac 2722

                                                                        
Query: 405  tgatttatcttcttggcgtaactctcaaagtgatctgcggttccagaaagttgggaggtc 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2721 tgatttatcttcttggcgtaactctcaaagtgatctgcggttccagaaagttgggaggtc 2662

                                                                        
Query: 465  cattttgatactaagtcatccaaagtcttattgtcgagggaaacaggttcgatagtaacg 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2661 cattttgatactaagtcatccaaagtcttattgtcgagggaaacaggttcgatagtaacg 2602

                                                                        
Query: 525  ggtttagtagatgtctttgttccagttgtagtttcctgcttaacactttcagttggttct 584
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 2601 ggtttagtagatgtctttgttccagttgtagtttcctgcttagcactttcagttgtttct 2542

                                                             
Query: 585  ttggtagtatccggtttcagaccgtccaaagaatagggaaggagcttca 633
            |||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct: 2541 ttggtagtatccggtttcagaccgcccaaagaa-aaggaaggagcttca 2494


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7252
Number of Sequences: 1807
Number of extensions: 7252
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)