BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZD07FM1.SCF screened BAC_end
         (835 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1117                                                         410   e-114

>3x_Contig1117 
          Length = 4940

 Score =  410 bits (207), Expect = e-114
 Identities = 233/238 (97%), Gaps = 4/238 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   agcgggatggttgaacaatggagagaaatgcaagtcagtgattctggaagtatttcttct 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 agcgggatggttgaacaatggagagaaatgcaagtcagtgattctggaagtatttcttct 1816

                                                                        
Query: 146  catgacagtaacaccgggatgctagactctccagagagtctaacgtctagtcctgataag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 catgacagtaacaccgggatgctagactctccagagagtctaacgtctagtcctgataag 1876

                                                                        
Query: 206  aaggaccattattctcattcaagtcattcgacatcaataagtagttcttcatc--tttct 263
            |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 1877 aaggaccattattctcattcaagtcattcgacatcaataagtagttcttcatcctcttct 1936

                                                                      
Query: 264  tct-cttc-aatctaccgcatggaatggtaactgacaatggtatgcttgacgaagata 319
            ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 tctccttcgaatctaccgcatggaatggtaactgacaatggtatgcttgacgaagata 1994


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,284
Number of Sequences: 1807
Number of extensions: 26284
Number of successful extensions: 4550
Number of sequences better than 1.0e-20: 1
length of query: 835
length of database: 10,358,551
effective HSP length: 16
effective length of query: 819
effective length of database: 10,329,639
effective search space: 8459974341
effective search space used: 8459974341
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)