BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZD07RM1.SCF screened BAC_end
         (893 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1581                                                        1338   0.0  

>3x_Contig1581 
          Length = 11429

 Score = 1338 bits (675), Expect = 0.0
 Identities = 737/757 (97%), Gaps = 1/757 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    cgatgtgaaaanactcgggaaaactacagcattattatgagaatgactatgcatcgaaat 107
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaa-actcgggaaaactacagcattattatgagaatgactatgcatcgaaat 10917

                                                                         
Query: 108   tacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcac 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10916 tacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcac 10857

                                                                         
Query: 168   aaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10856 aaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 10797

                                                                         
Query: 228   tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10796 tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 10737

                                                                         
Query: 288   aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10736 aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 10677

                                                                         
Query: 348   aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10676 aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 10617

                                                                         
Query: 408   aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10616 aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 10557

                                                                         
Query: 468   atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10556 atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 10497

                                                                         
Query: 528   catagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaa 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496 catagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaa 10437

                                                                         
Query: 588   ctgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaatt 647
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10436 ctgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaatt 10377

                                                                         
Query: 648   cttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttncggaag 707
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10376 cttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccggaag 10317

                                                                         
Query: 708   aaaatccataaaggggactgaatgcgaaatacaccgcttctgtaatggcaaaaaggtacc 767
             |||||||||||| || ||||||||||||  ||||||||   ||| |||||||| |  |||
Sbjct: 10316 aaaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggtaacc 10257

                                                  
Query: 768   aattcccaaaatttatattgccaanaaacactagcgt 804
             |  || ||||| ||||  |||||| ||||||||||||
Sbjct: 10256 acatcacaaaagttattatgccaagaaacactagcgt 10220


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6439
Number of Sequences: 1807
Number of extensions: 6439
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)